seb-mueller

Sebastian's repositories

snakemake-bisulfite

Pipeline for BS-Seq data based on snakemake

Language:Python6 20

simulate-rnaseq-reads

Simulating RNA-Seq reads from transcriptome to test software (e.g. for Drop-Seq singleCell software)

Language:PythonApache-2.03 20

ChIP-Seq_Anidulans

Code for analysis of Aspergillus nidulans H3, H3K9ac and K3K14ac ChIP-Seq libraries

Language:RGPL-3.01 20

chlamy_locus_map

Small RNA Locus Map for Chlamydomonas reinhardtii

Language:RGPL-3.01 3 15

scripts_tribe

Interspecific hybridization in tomato influences endogenous viral sRNAs and alters gene expression

Language:RCC-BY-4.01 20

Arabidopsis_smallRNA_loci

Additional material for small RNA loci project

Language:R020

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell010

blog

technical blog based using github pages

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dropSeqPipe

A SingleCell RNASeq pre-processing pipeline built on snakemake

Language:RCC-BY-SA-4.0020

FastFold

Speed up Vim by updating folds only when called-for.

Language:Vim Script010

JumpToVerticalOccurrence

Like f{char}, but searching the same screen column, not line.

Language:Vim script020

kwbdi.vim

Keep Window on Buffer Delete - Improved

Language:Vim script020

memes

An R interface to the MEME Suite

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language:PythonGPL-3.0010

netlify-source

Hugo sources for netlify deployment

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nvim-send-to-term

Neovim plugin for REPL integration

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protr

🧬 Toolkit for generating various numerical features of protein sequences

Language:RNOASSERTION000

python-basic

Python3 teaching materials for basic introduction to Python (2 days)

Language:Jupyter NotebookUnlicense020

R-code-misc-seb

Miscellaneous R functions and code chunks

Language:RGPL-3.0020

roc

protocols

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sceasy

A package to help convert different single-cell data formats to each other

Language:RGPL-3.0010

scRNA.seq.course

Analysis of single cell RNA-seq data course

Language:TeXGPL-3.0020

Seurat.utils

Various utility functions for Seurat single-cell analysis

Language:RGPL-3.0000

singularity_dropSeqPipe

Singularity container for dropSeqPipe

GPL-3.0020

singularity_srna_phasing

sRNA phasing software singularity container

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snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Language:HTMLMIT010

snakemake_sRNAseq

Snakemake workflow for processing small RNA-seq libaries

Language:PythonApache-2.0020

supervision_bioinformatics_partII_compsci

supervision worksheets for bioinformatics module (part II Computer Science, University of Cambridge)

Language:TeX020

vim-fq

First vim plugin to play around using fastq files as playground

Language:Vim Script020

vim-matchup

vim match-up: even better % :facepunch: navigate and highlight matching words :facepunch: modern matchit and matchparen replacement

Language:Vim ScriptMIT010