LaboBioInfoUQÀM's repositories
Canadian-cropland-dataset-github
This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.
CASTOR_KRFE
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
RL-bgc-components
Reinforcement learning for improving components in fungal BGCs
mirLibSpark
microRNA validation using Spark framework
CASTOR_KRFE_v1.0
[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
RECOMB-CG-2019_supp
Supporting data RECOMB-CG 2019
slm_kgenomvir
Evaluation of Statistical Linear Models for Genome Virus Classification
WGS_Pipeline
Pipeline for analysis of DNA-seq on Compute Canada HPC servers.
Bioinfo-Workshops
Bioinfo-Workshops hosts hands-on tutorials and exercises covering NGS analysis, R programming, Linux basics, and more in bioinformatics.
datasets_for_ML
A list of projects and datasets for practicing machine learning (ML).
Nucleotide-sequence-metadata-downloader
Python script to download metadata associated with nucleotide sequences. The script takes as input a sequence file in fasta format where the id corresponds to the accession number of each sequence. It gives as output a file in excel format containing the different metadata related to the sequences available from the genbank database.
cohesion_index
Computing clustering indices: Silhouette, Cohesion, Calinski et Dunn
dairy_biomarkers
Ensemble supervised learning approach to discover discriminative biomarkers that predict dairy cow welfare.
longranger_templates
longranger cluster templates
ORF-finder
This script take as input a fasta file and identify all open reading frames for each sequence