LaboBioInfoUQÀM

Canadian-cropland-dataset-github

This repository houses a novel patch-based dataset compiled using optical satellite images of Canadian agricultural croplands retrieved from Sentinel-2.

CASTOR_KRFE

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

fungalbgcdata

TOUCAN

Supervised learning for fungal BGC discovery

RL-bgc-components

Reinforcement learning for improving components in fungal BGCs

Caribou

Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning

KEVOLVE

Method based on genetic algorithm that uses machine learning to extract a bag of minimal sets of features maximizing a given performance threshold

mirLibSpark

microRNA validation using Spark framework

tgowler

TGROWLeR system abstracts general patterns from workflow sequences previously extracted from texts. It comprises two modules –a workflow extractor and a pattern miner– both relying on a specific domain ontology.

CASTOR_KRFE_v1.0

[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE

evoVGM

Evolutionary-based Variational Generative Model using Multiple Sequence Alignments

RECOMB-CG-2019_supp

Supporting data RECOMB-CG 2019

slm_kgenomvir

Evaluation of Statistical Linear Models for Genome Virus Classification

WGS_Pipeline

Pipeline for analysis of DNA-seq on Compute Canada HPC servers.

datasets_for_ML

A list of projects and datasets for practicing machine learning (ML).

Nucleotide-sequence-metadata-downloader

Python script to download metadata associated with nucleotide sequences. The script takes as input a sequence file in fasta format where the id corresponds to the accession number of each sequence. It gives as output a file in excel format containing the different metadata related to the sequences available from the genbank database.

cohesion_index

Computing clustering indices: Silhouette, Cohesion, Calinski et Dunn

dna_fun

Printing a fasta file in the form of double stranded DNA

evoVGM_Exp

LAAMS

Supervised learning for Lactanet Automatic Milking Systems (AMS) data

longranger_templates

longranger cluster templates

method

Method developed

methylc-seq

ORF-finder

This script take as input a fasta file and identify all open reading frames for each sequence

RNA_seq_pipeline

the-canadian-cropland-dataset-website

w4CSeq

web server of 4C-Seq data analysis pipeline

Welfare_AI

welfare_ai_2.0