DebeshJha

2020-CBMS-DoubleU-Net

Official implementation of DoubleU-Net for Semantic Image Segmentation in TensorFlow & Pytorch (Nominated for Best Paper Award (IEEE CBMS))

ResUNetPlusPlus

Official code for ResUNetplusplus for medical image segmentation (TensorFlow & Pytorch implementation)

ResUNetPlusPlus-with-CRF-and-TTA

Official implementation of ResUNet++, CRF, and TTA for segmentation of medical images (IEEE JBIHI)

ColonSegNet

Official implementation of ColonSegNet: Real-Time Polyp Segmentation (Used in NVIDIA Clara Holoscan App for Polyp Segmentation)

NanoNet

Official implementation of NanoNet: Real-time medical Image segmentation architecture (IEEE CBMS)

GastroVision

GastroVision: A Multi-class Endoscopy Image Dataset for Computer Aided Gastrointestinal Disease Detection https://drive.google.com/drive/folders/1T35gqO7jIKNxC-gVA2YVOMdsL7PSqeAa?usp=sharing

TransNetR

Official implementation of TransNetR: Transformer-based Residual Network for Polyp Segmentation with Multi-Center Out-of-Distribution Testing (MIDL 2022)

Kvasir-Instrument

GitHub repository for the Kvasir-instrument dataset

PolypGen

A multi-centre polyp detection and segmentation dataset for generalisability assessment https://www.nature.com/articles/s41597-023-01981-y

UNet-insturment-segmentation

Tensorflow implementation of UNet on surgical Instrument dataset from laparoscopic videos

DoubleUNet

PyTorch implementation of DoubleUNet for medical image segmentation

PVTFormer

CT Liver Segmentation Via PVT-based Encoding and Refined Decoding

ResUNetplusplus-PyTorch-

PyTorch implementation of ResUNet++ for Medical Image segmentation

opendatasets

Free datasets for open research, and development

Doubleunet_pytorch

Official implementation of DoubleU-Net: A Deep Convolutional Neural Network for Medical Image Segmentation (pytorch implementation)

Kvasir-SEG

Kvasir-SEG: A Segmented Polyp Dataset

Kvasircapsule-SEG

NanoNet: Real-Time Polyp Segmentation in Capsule Endoscopy & Colonoscopy [Contains an open-access capsule endoscopy dataset (2021 IEEE CBMS)]

LightLayers

LightLayers: Parameter Efficient Dense and convolutional Layers for Image Classification (PDCAT-PAAP)

MDNet

Multi Decoder Network for Polyp Segmentation

TransRUPNet

TransRUPNet for Improved Out-of-Distribution Generalization in Polyp Segmentation

DebeshJha

holoscan-sdk

The AI sensor processing SDK for low latency streaming workflows

ImageCLEFmed-MEDVQA-GI-2023

Visual question answering (VQA)

Labelling_tool

List of labelling tools for computer vision tasks

LDPolypVideo-Benchmark

A public endoscopic video dataset for polyp detection

MKDCNet

Automatic Polyp Segmentation with Multiple Kernel Dilated Convolution Network

reproducible_models

Reproducible deep learning models with weight files for method comparison.

TransResUNet

TransResU-Net: Transformer based ResU-Net for Real-Time Colonoscopy Polyp Segmentation

vit-pytorch

Implementation of Vision Transformer, a simple way to achieve SOTA in vision classification with only a single transformer encoder, in Pytorch

VPS

Video Polyp Segmentation (VPS)