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Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
Python package with library and CLI tool for analyzing SeaFlow data
Size-structured matrix population model for Prochlorococcus
Conversion from light scattering measured by SeaFlow to cell diameter
cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880
Size-structured matrix population model for SeaFlow data
SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.
Conversion from light scattering measured by SeaFlow to carbon per cell
Calibration of SeaFlow's Virtual Core