Parker Institute for Cancer Immunotherapy

premessa

R package for pre-processing of mass and flow cytometry data

blockoid

A lightweight Clojurescript wrapper around Blockly

flow-analysis-tutorial

A tutorial for the analysis of high-dimensional flow cytometry data

datomic-query-improver

Heuristics for improving generated and ad hoc Datomic query performance.

datalogr

An R package to write Datalog queries and interact with a Datomic database

panorama

R package for interactive visualization and analysis of single-cell data

vite

R package for analysis of single-cell data using graphs

grappolo

R package to cluster single-cell data and generate features that can be used for model building

MORRISON-1-public

public facing repository for processed data related to MORRISON 1

tesla

Repository for published code from Tumor nEoantigen SeLection Alliance

mesmer-wdl-workflow

pixi-plot

kumquat

lohhla-container

A container for LOHHLA

prince-trial-data

Public release of PRINCE trial data

single-cell-mutations

vartrix pipeline

covid-19

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

fcs-write

Node based FCS (Flow Cytometry Standard) file writer.

jekyll-auth

A simple way to use GitHub OAuth to serve a protected Jekyll site to your GitHub organization

jekyll-google-auth

mibi_processing

Tools to process MIBI images

oz

Data visualizations in Clojure and ClojureScript using Vega and Vega-lite

packages

Javascript libraries packaged up with Google Closure externs

ring-oauth2

OAuth 2.0 client middleware for Ring

single_cell_workflows

Dockstore wdl workflows for single cell processing (*RNAseq, snATACseq)

sitc2022_brain_tumor_poster

Vectra_Imaging_pipeline

Vectra Imaging Quality Control and Processing Pipeline

vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.