Center for microbial ecology and technology, Ghent University's repositories
Phenoflow_package
R package offering functionality for the advanced analysis of microbial flow cytometry data
MicroRaman
MicroRaman is an R package to process microbial Raman Spectroscopy data
FCMvsRaman
Characterizing phenotypic heterogeneity using flow cytometry and Raman spectroscopy
Dhaenens-et-al.-2021
R Code used in the manuscript: Characterization of the endometrial and vaginal microbiome in patients with repeated implantation failure and fertile women: a cross-sectional study.
Garcia-Timermans_et_al_2023
Accompanying code to Garcia-Timermans et al 2023
HOB_Enrichment
Repository for data analyses scripts of Hu et al. (2019)
Kerckhof_Sakarika_et_al_2021
Accompanying code to Kerckhof & Sakarika 2021
PhenoGMM
Repository accompanying the paper "PhenoGMM: Gaussian mixture modelling of microbial cytometry data enables efficient predictions of biodiversity".
Phylogeny_ElectroAutotrophs
Underlying code for the bio-informatics of Prévoteau et al. (2020)
Raman_PhenoDiv
Raman spectroscopy-based measurements of single-cell phenotypic diversity in microbial communities
RamanMP
Repository for data analysis García-Timermans et al (2020b)
Sakarika-Kerckhof-et-al-2023
Accompanying code to Sakarika, Kerckhof et al. 2023 - "Growth rate and limiting substrate define the nutritional composition and cell size of microbial biomass for food applications " (in prep)