enzymes

There are 3 repositories under enzymes topic.

AspirinCode / awesome-AI4ProteinConformation-MD
List of protein (enzymes, antibody, and PPIs) conformations and molecular dynamics using generative artificial intelligence and deep learning
gan lstm-neural-networks molecular-dynamics transformer vae proteinconformations ppi active-learning flow gnns amber gromacs llm openmm enzymes
56
EngqvistLab / Tome
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
microbiology temperature-data enzymes machine-learning bioinformatics bacteria archaea eukaryotes
Language:Python 51
kamerlinlab / KIF
KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
analysis biophysics computational-biology enzymes interactions machine-learning molecular-dynamics proteins
Language:Python 23
HobnobMancer / cazy_webscraper
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
cazy cazymes scraper cazy-family cazy-webscraper protein-sequences genbank protein-structures gtdb bioinformatics carbohydrates database enzymes genomics python
Language:Python 13
rvhonorato / cazy-parser
A way to extract specific information from CAZy
carbohydrates cazy data-mining enzymes scrapper text-mining
Language:Python 12
davidkastner / quantumPDB
Workflow for generate a database of proteins with quantum properties
machine-learning quantum-chemistry enzymes
Language:Python 8
GRONINGEN-MICROBIOME-CENTRE / MicrobeRX
MicrobeRX
cheminformatics computational-biology drug-design enzymes gut-microbiome metabolic-models metabolite metabolite-identification metabolite-prediction microbiome
Language:Python 8
alexandrova-lab-ucla / phd3
QM/DMD engine. Protein Hybrid Discrete Dynamics/DFT
chemistry computational-chemistry proteins qmmm qmmd molecular-dynamics enzymes metalloenzymes quantum-mechanics
Language:Python 6
opentecr / opentecr
contains general information about the openTECR database
database enzymes metabolism opentecr thermodynamics
5
balcilar / GCNNCourseCodes
Graph Analysis Course Notes
tensorflow graphneuralnetwork graphclassification enzymes gcnn
Language:Python 4
andrewtarzia / enzyme_screen
Molecular size calculations for enzyme reaction screening in metal--organic frameworks
enzymes screening mofs molecular-size
Language:Jupyter Notebook 1
EngqvistLab / brenparse
A library for parsing out data from the BRENDA database html files
brenda brenda-parser enzymes enzyme-kinetics biochemistry web-scraping
Language:HTML 1
o-ikne / GCN-Labs
This repository contains labs and tutorials on Convolutional Graph Networks (GCNs).
asl convolutional-networks deep-learning enzymes gcn graph hand-gesture-recognition mediapipe pytorch
Language:Jupyter Notebook 1
opentecr / opentecr-data
contains the actual data for the openTECR database
database enzymes metabolism opentecr thermodynamics
1
brandon-holt / enzyme-simulation
An interactive enzyme substrate simulation for LSI at Georgia Tech
bioengineering diagnostics enzymes simulation
Language:C# 0
fork123aniket / End-to-End-Node-and-Graph-Classification-and-Explanation-App
Streamlit App for Node and Graph Classification and Explainability
cora dvc-for-data-science dvc-pipeline enzymes graph-classification graph-convolutional-networks graph-explain graph-neural-networks graph-representation-learning mlflow node-classificaiton optuna pytorch pytorch-geometric streamlit streamlit-cloud streamlit-sharing streamlit-webapp
Language:HTML 0
Morse-codedecipher / Life-Science-Notes-
This website is made to render aid to fellow students whom may be nervous with regards to their Life Science exam .I hope theses notes would serve you well for your upcoming mid year examinations !!! Good luck !!!
cellular-transport enzymes hydroponics nutriition-in-plants plant-transport seed-structure-and-germination
0
pywood21 / clustvis_2019
Sample program for cluster analysis
bagasse degradation enzymes k-means-clustering
Language:Jupyter Notebook 0
ThierryMondeel / BST_2017_Gear-shifting
Figure 5 - Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters
gear-shifting systems-biology flux-balance-analysis python enzymes
Language:HTML 0
EngqvistLab / biomark_assays
Enzyme kinetic assays in the Fluidigm Biomark HD instrument
enzyme-kinetics microfluidics qpcr high-throughput enzymes biology
Language:HTML
hafeez-syed / archived--sick-fits-store
Sick Fits Store - Frontend
react graphql nextjs apollo apollo-client apollographql nodejs jest enzymes styled-components e-commerce server-side-rendering
Language:JavaScript
jacgonisa / MSc_thesis
Pipeline developed during my MSc thesis: "Detection of Metagenomic Enzyme Variants of Biotechnological and Ecological Interest: The Case of Plastic-Degrading Enzymes"
biotechnology enzymes metagenomics phylogenomics
Language:Python
roberts-farm-of-ideas / 5
Generalized yields of coupled enzymatic reactions.
science-ideas enzymes thermodynamics reaction open-science enzymatic-reactions coupled-reactions
YogiOnBioinformatics / DAME-Destruction-of-Aqueous-Microfibers-Enzymatically
Destruction of Aqueous Microfibers Enzymatically (DAME): A novel Synthetic Biology systems approach to destroying Polyester-based Microplastic fibers
bacteria biology enzymes grant igem microbiology microfibers microplastics proposal synthetic-biology