Groningen Microbiome Centre 's repositories
Groningen-Microbiome
Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
DMP
Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)
Lifelines_NEXT
Lifelines NEXT is a birth cohort designed to study the effects of intrinsic and extrinsic determinants on health and disease in a four-generation design. It is embedded within the Lifelines cohort study, a prospective three-generation population-based cohort study recording the health and health-related aspects of 167,729 individuals living in Northern Netherlands. In Lifelines NEXT we include 1500 pregnant women intensively follow them, their partners and their children until at least 1 year after birth. This repository describes the codes for the microbiome associated projects within Lifelines NEXT including fecal (microbiome and virome), breastmilk microbiome, vaginal mcirobiome and oral microbiome. Here we also integrate mutpliple multi-omic layers including metabolomics, proteomics and extensive phenotypic data
MicrobeRX_DrugPredictions
This repository includes the databases and analysis workflow for 1083 orally administrated drugs using MicrobeRX
Fecal_Metabolites_IBD
Fecal Metabolomics in 255 non-IBD and 495 IBD samples
DMP_MentalHeath
Dutch Microbiome Project, gut-brain axis
LLNEXT_pilot
We studied the dynamics of the maternal gut virome during and after pregnancy, the infant gut virome during early life, with a particular focus on the transmission of viral strains from mothers to their infants.
TransplantLines
TransplantLines project
Phip-Seq_LLD-IBD
Scripts for data analysis of Phip-Seq (microbial and allergen libraries) in LLD and 1000IBD studies
SNV_Calling-Association
Scripts for calling microbiome SNV and downstream analysis
2024_Workshops_for_students
Microbiome workshops for students
GMH_MGS_pipeline
Groningen Microbiome Hub Metagenomic data analysis pipelines and scripts
GUTS_MGS_Psych
Analysis scripts GUTS project. Metagenomics shotgun sequencing association with psychiatric patients.
Lifelines_NEXT_milk_microbiota
Research of mother milk and infant microbiome
STEMI_microbiome
Research of microbiome in ST-Elevated Myocardial Infarction (STEMI).