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Ali Aghaeifar (aghaeifar)

aghaeifar

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Company:Max Planck Institute for Biological Cybernetics

Location:Tübingen

Home Page:https://www.kyb.tuebingen.mpg.de/person/59017/2549

Twitter:@AAghaeifar_MRI

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Ali Aghaeifar's repositories

optimized_multi_coil

Optimization of multi-coil shim setup for human brain shimming. Please cite our paper if you used the code and found it useful: https://doi.org/10.1002/mrm.27929.

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recoMRD

Python scripts to read and reconstruct ismrmrd (mrd) format

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SpinWalk

SpinWalk, a framework for Monte-Carlo simulation to model spins random walk within a microvascular network. SpinWalk can be also employed to simulate diffusion in a microstructure substrates.

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AMaSh

Advacned Magnetic field Shimming

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bet2

MATLAB mex interface and Python wrapper for standalone Brain Extraction Tool (bet2),

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RecoTwix

scripts for reconstruction of MRI data from Siemens rawdata files (twix)

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aghaeifar.github.io

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Biot-Savart

Simulation of Biot-Savart law - Analytical solution to calculate magnetic field of an arbitrarily shaped coil. MATLAB and Python interface are provided.

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TurboBloch

Implementation of Bloch equation simulator for magnetic resonance imaging (MRI) sequences

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twixtools

python file reader/writer for Siemens MRI raw data + compression utility

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vini

viewer for MRI data & numpy arrays

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