BioSimulations

biosimulations

A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results

deployment

Kubernetes Configuration for BioSimulations

biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

biosimulations-rulehub

Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations

.github

GitHub profile for the BioSimulations organization

biosimulations-modeldb

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

eslint-plugin-exclude-strings

hdf-rest-api

material-file-input

File input for Angular Material form-field

nestjs-bullmq

nx-python

🐍 Plugin for using Python in an Nx Workspace

static

Repository for holding static files hosted at https://static.biosimulations.org

status

📈 Uptime monitor and status page for BioSimulations, powered by @upptime

biomodels-qc

Quality control tool for the BioModels repository of biochemical models

biosimulations-physiome

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects

biosimulations-runutils

Automation tools for running and comparing biosimulations from OMEX archives.

cellml-validation

A suite of CellML files used to test validation methods

hsds

Cloud-native, service based access to HDF data

Owl2Json

A very simple Java program to produce a JSON file from an ontology IRI