omex

There are 0 repository under omex topic.

Biosimulators
biosimulators / Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
systems-biology computational-biology mathematical-model kinetic-model simulation sbml sed-ml combine omex docker kisao sbo reuse reproducibility
Language:Python 13
Biosimulators_utils
biosimulators / Biosimulators_utils
Utilities for building standardized command-line interfaces for biosimulation software packages
systems-biology computational-biology mathematical-modeling simulation sed-ml combine omex biosimulators kisao python
Language:Python 5
Biosimulators_AMICI
biosimulators / Biosimulators_AMICI
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
sbml systems-biology computational-biology sed-ml combine omex mathematical-model simulation biosimulators
Language:Python 2
Biosimulators_pyNeuroML
biosimulators / Biosimulators_pyNeuroML
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
computational-neuroscience mathematical-modeling numerical-simulation neuroml sed-ml combine omex biosimulators
Language:Python 2
Biosimulators_tutorials
biosimulators / Biosimulators_tutorials
Tutorials for BioSimulators
systems-biology computational-biology mathematical-modeling numerical-simulation combine omex sed-ml sbml biosimulators biosimulations jupyter tutorial
Language:Jupyter Notebook 2
maurosilber / biomodels
Python library to download and cache models from BioModels
biomodels combine omex sbml sed-ml
Language:Python 2
biosimulations-bigg
biosimulations / biosimulations-bigg
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
metabolism cell-biology flux-balance-analysis fba sbml sed-ml combine omex systems-biology computational-biology bigg biosimulations biosimulators
Language:Python 1
biosimulations-rulehub
biosimulations / biosimulations-rulehub
Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations
biosimulations rulehub bionetgen bngl computational-biology systems-biology sed-ml combine omex
Language:Python 1
Biosimulators_MASSpy
biosimulators / Biosimulators_MASSpy
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
metabolism reaction-network systems-biology computational-biology mathematical-model numerical-simulation sbml sed-ml omex combine kisao biosimulators
Language:Python 1
Biosimulators_OpenCOR
biosimulators / Biosimulators_OpenCOR
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology mathematical-modeling numerical-simulation cellml sed-ml combine omex biosimulators
Language:Python 1
Biosimulators_PySCeS
biosimulators / Biosimulators_PySCeS
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
mathematical-model simulation sbml sed-ml combine omex systems-biology computational-biology kinetic-model biochemical-network biosimulators
Language:Python 1
biosimulations-modeldb
biosimulations / biosimulations-modeldb
Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations
biosimulations sed-ml combine omex modeldb xpp systems-biology computational-biology neuron electrophysiology
Language:MATLAB 0
biosimulators.github.io
biosimulators / biosimulators.github.io
Summary of the technical documentation for BioSimulators
systems-biology computational-biology modeling simulation biosimulators sed-ml sbml combine omex
Language:Python 0
biosimulations-physiome
biosimulations / biosimulations-physiome
Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
systems-biology computational-biology cellml physiome-model-repository pmr combine omex sed-ml
Language:JavaScript
Biosimulators_BoolNet
biosimulators / Biosimulators_BoolNet
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
sbml logical-model sed-ml combine omex biosimulators mathematical-model systems-biology computational-biology
Language:Python
Biosimulators_CBMPy
biosimulators / Biosimulators_CBMPy
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
sbml fba flux-balance-analysis systems-biology computational-biology sed-ml combine omex biosimulators
Language:Python
Biosimulators_GINsim
biosimulators / Biosimulators_GINsim
GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
logical-modeling sbml-qual sed-ml combine omex ginsim qualitative-modeling biosimulators
Language:Python
Biosimulators_iBioSim
biosimulators / Biosimulators_iBioSim
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology computational-biology sbml sed-ml combine omex biosimulators mathematical-model kinetic-model simulation biochemical-network
Language:Python
Biosimulators_LibSBMLSim
biosimulators / Biosimulators_LibSBMLSim
LibSBMLSim mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
computational-biology numerical-simulation mathematical-modelling sbml libsbmlsim combine omex sed-ml biosimulators systems-biology
Language:C
Biosimulators_RBApy
biosimulators / Biosimulators_RBApy
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology mathematical-modeling numerical-simulation resource-balance-analysis rba sed-ml combine omex biosimulators biochemistry cell-biology
Language:Python
Biosimulators_XPP
biosimulators / Biosimulators_XPP
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
mathematical-model numerical-simulation biosimulators sed-ml combine omex kisao xpp
Language:Python

omex

biosimulators / Biosimulators

biosimulators / Biosimulators_utils

biosimulators / Biosimulators_AMICI

biosimulators / Biosimulators_pyNeuroML

biosimulators / Biosimulators_tutorials

maurosilber / biomodels

biosimulations / biosimulations-bigg

biosimulations / biosimulations-rulehub

biosimulators / Biosimulators_MASSpy

biosimulators / Biosimulators_OpenCOR

biosimulators / Biosimulators_PySCeS

biosimulations / biosimulations-modeldb

biosimulators / biosimulators.github.io

biosimulations / biosimulations-physiome

biosimulators / Biosimulators_BoolNet

biosimulators / Biosimulators_CBMPy

biosimulators / Biosimulators_GINsim

biosimulators / Biosimulators_iBioSim

biosimulators / Biosimulators_LibSBMLSim

biosimulators / Biosimulators_RBApy

biosimulators / Biosimulators_XPP