biobank

There are 0 repository under biobank topic.

• OCT-Converter

  marksgraham / OCT-Converter

  Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

  octfundustopconbiobankheidelbergzeissfdae2edicompython
  Language:Python 184

• molgenis / molgenis

  MOLGENIS - for scientific data: management, exploration, integration and analysis.

  molgenisjavalifesciencegeneticsbioinformaticsbiobankcataloguejavascriptfreemarker
  Language:Java 109

• kenhanscombe / ukbtools

  An R package to manipulate and explore UK Biobank data

  ukbbiobankuk-biobankrkcl-sgu
  Language:HTML 91

• hakyimlab / ukbrest

  ukbREST: efficient and streamlined data access for reproducible research of large biobanks

  biobankuk-biobankreproducible-researchreproducible-sciencereproducibility
  Language:Python 38
• limbus

  AberystwythSystemsBiology / limbus

  LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

  biobankbiobankingbiospecimenlims
  Language:Python 29

• CBSR-Biobank / biobank

  Biorepository application for tracking biospecimens.

  biobankbiospecimenbioinformaticslims
  Language:Java 20

• CBSR-Biobank / bbweb

  Biobank Web Application

  biobankbiospecimenbioinformaticslims
  Language:Scala 17
• snpnet

  rivas-lab / snpnet

  snpnet - Efficient Lasso Solver for Large-scale genetic variant data

  statistical-learninglassopredictiongeneticsbiobanksnpnet-coxcox-regressionsparselinear-regressionsurvival-analysisukbiobankelastic-net-regression
  Language:R 17

• BBMRI-ERIC / miabis

  The Minimum Information About BIobank data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of minimal biobank-related data for different purposes across a wide range of database implementations.

  biobankbiobank-databiobankingbiosampledata-sharing-standard
  12

• TIBHannover / BacDiveR

  Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

  rmicroorganismbacterial-databasebacteriologywebservice-clientmicrobiologybiobankr-packagerstatsbacterial-samplesrlangrlanguagebacterialdiversitybacteriaapi-clientbacdive
  Language:R 11

• samply / bbmri-fhir-ig

  This is the source for the BBMRI.de / GBA Implementation Guide.

  fhirfhir-profilesbiobank
  Language:GLSL 6

• BBMRI-ERIC / negotiator-v2

  The BBMRI-ERIC Negotiator service for structured negotiation with biological resources dealing with human data and/or biological samples.

  biobankjavanegotiationspecimen
  Language:Java 5

• hdg204 / Rdna-nexus

  Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench

  biobankbioinformaticsdnageneticsnexusrriskscoressnpuk
  Language:R 5

• BBMRI-ERIC / negotiator

  An Open-source access negotation system for Research Infrastructures

  biobankaccess-managementbbmrinegotiatorresearch
  Language:Java 3

• BBMRI-ERIC / negotiator-frontend

  The BBMRI-ERIC Negotiator is a service for structured negotiation with biological resources dealing with human data and/or biological samples. The reference implementation for the frontend is available in this repository.

  access-managementbiobankvuejsnegotiation
  Language:Vue 3

• jlc-christie / axivity-ax3-tool

  Command line tool written in c++ for easily extracting light and temperature data from Axivity AX3 accelerometers used in the UKBiobank

  cplusplus-11axivityax3ukbiobankbiobank
  Language:C++ 3
• multisnpnet-Cox

  rivas-lab / multisnpnet-Cox

  Multiresponse time-to-event Cox proportional hazards model - CPU

  cox-phcox-modelcox-regressionsurvival-analysissurvival-predictioncpumultiresponse-sparse-regressionhuman-geneticsbiobank
  Language:R 3

• BBMRI-cz / fhir-module

  A data integration tool for BBMRI-ERIC biobanks.

  biobankdata-integrationfhirbbmri
  Language:Python 2

• christacaggiano / treeWas-exploration

  exploration of TreeWas/TreeWas2 code for the Zaitlen lab. Based on TreeWas developed by McVean Lab @ Oxford.

  treewasbiobankstatistical-genetics
  Language:HTML 2

• lwaw / UK-Biobank-scraper

  A script that will download meta-data from the UK Biobank website (https://www.ukbiobank.ac.uk).

  biobankbioinformaticsmetadatascraperuk
  Language:Python 2

• rivas-lab / multisnpnet-Cox_gpu

  Multiresponse time-to-event Cox proportional hazards model - GPU

  cox-regressionsurvival-analysismultiresponse-sparse-regressiongeneticsbiobankprediction-modelgpugpu-accelerationgpu-computing
  Language:C++ 2

• cmiranda16PonceHealthSciencesUniversity / dsb3_Celso-Schematic-Spatial-Reducing-Inception-3D-Block

  A deep learning framwork for lung cancer prediction

  biobankbiorepositirytissue-classificationoperational-researchmedicineclinical-researchclinical-trialsclinical-decision-supportinceptiontransfer-learning
  Language:Python 1

• evankiely / OpynSpecimen

  An object oriented wrapper and tooling for the OpenSpecimen API, written in Python

  openspecimenkrishagnibiobankbiobankingbiobank-dataclinicalclinical-trialsclinical-dataclinical-researchbiospecimen
  Language:Python 1

• sjharw / Biobank-Prioritisation-Tool

  This project provides a tool to assist biobanks with prioritising species for conservation and research.

  biobankbiobankingbiologydatatableflask-applicationpythonsql
  Language:Python 1

• WTobor / Biobank

  Development medical module software for biobank.

  webformsaspnetcsharpbiobankbioinformaticsmaster-thesisdevelopment-medical
  Language:C# 1

• BBMRI-cz / bbmri-export

  This repository contains data description for BIMS export

  biobankbiobanking
  0

• chrmey / SPRECLib

  Java Library that implements the Sample PREanalytical Code Version 2 from ISBER

  biobankbiobankingsprecisber
  Language:Java 0

• IICTR / Columbia-COVID-19-Biobank-Questionnaires

  columbiabiobankcovid-19redcapquestionnairepatient
  0

• PatmosStudios / baobab_website

  SANBI Wordpress Baobab website

  sanbibiobankbaobabwebsitewordpress
  Language:PHP 0

• itcr-uni-luebeck / AutomatedStorageSystemTestProtocol

  This repository provides our generic test protocol for the integration test of ASS.

  dataqualitybiobanktesting