hakyimlab

MetaXcan

MetaXcan software and manuscript

PrediXcan

PrediXcan Project

ukbrest

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

gtex-gwas-analysis

PredictDB_Pipeline_GTEx_v7

PredictDB Pipeline for GTEx v7 data

PredictDB-Tutorial

Tutorial for running the PredictDB pipeline with GEUVADIS data

Training

brainxcan

psychencode

https://hakyimlab.github.io/psychencode/

HGEN471-class

A repository for all things related to the Winter course, HGEN471

QGT-Columbia-HKI-repo

https://hakyimlab.github.io/QGT-Columbia-HKI-repo/

rat-genomic-analysis

https://hakyimlab.github.io/rat-genomic-analysis/

web-homepage

https://hakyimlab.org

deep-learning-genomics

Summer immersion syllabus in deep learning in genomics

nn-zero-to-hero

Neural Networks: Zero to Hero

PredictDb-nextflow

Rat_Genomics_Paper_Pipeline

rat_genomics_paper_pipeline_2024

https://hakyimlab.github.io/rat_genomics_paper_pipeline_2024/

archived-web-lab-notes

https://archived-web-lab-notes.hakyimlab.org

beauburnett

Beau's Blog deployed here https://beaus-blog.netlify.app

brainxcan-docs

enformer-pytorch

Hands-on-Training

https://hakyimlab.github.io/Hands-on-Training/

ptrs-tf

Building PTRS model using TensorFlow

ptrs-ukb

Calculate PTRS for UKB data

RatXcan_Training

https://sabrina-mi.github.io/RatXcan_Training/

sabrina-deep-learning-in-genomics

https://sabrina-dl.hakyimlab.org

TFPred-snakemake

web-course-material

https://course-material.hakyimlab.org

Yanyus-misc-tools

A scripting gallery containing random this and that.