Mark Graham's repositories
OCT-Converter
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
transformer-ood
Official PyTorch code for "Transformer-based out-of-distribution detection for clinically safe segmentation"
flip-sample-application
Example training application to run on FLIP
pretrained_generative_models
Pretrained generative models for MONAI Generative
markgraham539.github.io
Website
marksgraham
Config files for my GitHub profile.
spin-echo-POSSUM
Simulate spin-echo sequences in POSSUM
spm-hospital-preproc
A MATLAB toolbox for various preprocessing operations (registration, reslicing, denoising, segmentation, etc.) of neuroimaging data. Builds on the SPM12 software.
gcs_clustering
Cluster patients based on their time-series GCS scores.
GreengraphCoursework
For the software development for research course
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
List-of-US-States
List of US States in various Rails friendly formats
MedicalNet-models
Unofficial repository to easily access MedicalNet models
MedSegDiff
Medical Image Segmentation with Diffusion Model
memory-efficient-attention-pytorch
Implementation of a memory efficient multi-head attention as proposed in the paper, "Self-attention Does Not Need O(n²) Memory"
MonteCarloCoursework
For the software development for research course
tutorials
MONAI Tutorials