MOLGENIS - open source solutions for scientific data

systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

vip

Variant Interpretation Pipeline

NGS_DNA

NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC

molgenis-emx2

MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

molgenis-tools-commander

A command line interface for MOLGENIS

molgenis-service-armadillo

Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

molgenis-r-auth

Discover and authenticate against an OpenID server from R

NGS_Automated

Graph2VR

Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.

molgenis-r-armadillo

Client to manage shared files in the MOLGENIS Armadillo suite from R

NGS_RNA

vip-decision-tree

Decision tree module for the Variant Interpretation Pipeline (vip)

GAP

Genotyping Array Pipeline

metabrain

Various scripts to process RNAseq data for brain eQTL analysis

ds-tidyverse

ds-tidyverse-client

gdi-localportal

GDI implementation of Local portal: a Molgenis connected to REMS, with Keycloak and Postgres

PGx-pipeline

Farmacogenetics pipeline

projects-solve-rd

All things related to maintaining the RD3 database

sc-MetaBrain-consortium

ConcordanceCheck

datashield-qc

molgenis-projects

Repository containing settings, configuration files, and public data for different MOLGENIS project servers

molgenis-py-bbmri-eric

MOLGENIS Python tooling for BBMRI-ERIC

molgenis-r-datashield

Armadillo implementation of DSI to be DataSHIELD ready, part of the MOLGENIS suite

projects-rd-dashboards

projects-rd-erns

projects-rd-recon4imd

straglr

Fork of the version of the Straglr tool adapted by philres

take-it-easyconfigs