MOLGENIS - open source solutions for scientific data

capice

vip

Variant Interpretation Pipeline

cluster-utils

Collection of utilities / helper scripts to make life easier on our HPC clusters.

ngs-utils

Collection of notes and scripts related to NGS

molgenis-emx2

MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

ansible-pipelines

molgenis-service-armadillo

Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

NGS_Automated

vip-report-template

Report template for Variant Call Format (VCF) Report generator

Graph2VR

Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.

molgenis-r-armadillo

Client to manage shared files in the MOLGENIS Armadillo suite from R

NGS_RNA

asterix

Automated PGx pipeline

capice-resources

Repository for resource files for CAPICE and updating CAPICE model

GAP

Genotyping Array Pipeline

gdi-localportal

GDI implementation of Local portal: a Molgenis connected to REMS, with Keycloak and Postgres

metabrain

Various scripts to process RNAseq data for brain eQTL analysis

PGx-pipeline

Farmacogenetics pipeline

projects-solve-rd

All things related to maintaining the RD3 database

sc-MetaBrain-consortium

depad-utils

Utilities for deploy admins

nf_ngs_dna

projects-rd-dashboards

projects-rd-erns

projects-rd-recon4imd

spatial_fat

spatial FAT study, using spatial transcriptomics on fat tissue

straglr

Fork of the version of the Straglr tool adapted by philres

take-it-easyconfigs

vip-report-app

Variant Interpretation Pipeline report application

vip-web

Variant Interpretation Pipeline web interface