MOLGENIS - open source solutions for scientific data

vip

Variant Interpretation Pipeline

capice

molgenis-emx2

MOLGENIS EMX2, the latest version of the MOLGENIS data platform.

1M-cells

This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression regulation in immune cells” paper (https://doi.org/10.1038/s41467-022-30893-5)

vite-plugin-inline

Vite plugin that embeds .js and .css as base85 data

molgenis-tools-commander

A command line interface for MOLGENIS

molgenis-service-armadillo

Armadillo; a DataSHIELD implementation, part of the MOLGENIS suite

Graph2VR

Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.

NGS_Automated

vip-report-template

Report template for Variant Call Format (VCF) Report generator

NGS_RNA

metabrain

Various scripts to process RNAseq data for brain eQTL analysis

vip-report

Report generator for Variant Call Format (VCF) files

vip-report-api

Report API for Variant Call Format (VCF) Report templates

vip-report-vcf

TypeScript VCF library with support for both reading and writing

capice-resources

Repository for resource files for CAPICE and updating CAPICE model

ds-tidyverse

ds-tidyverse-client

projects-solve-rd

All things related to maintaining the RD3 database

sc-MetaBrain-consortium

ConcordanceCheck

covid19-qol-modelling

molgenis-r-datashield

Armadillo implementation of DSI to be DataSHIELD ready, part of the MOLGENIS suite

molgenis-r-qc

projects-rd-dashboards

projects-rd-erns

projects-rd-recon4imd

straglr

Fork of the version of the Straglr tool adapted by philres

vip-annotate

Variant Call Format (VCF) file annotation

vip-web

Variant Interpretation Pipeline web interface