metagenome-assembly

There are 2 repositories under metagenome-assembly topic.

ablab / spades
SPAdes Genome Assembler
genome-assembly sequence-assembler sequencing transcriptome-assembly illumina metagenome-assembly next-generation-sequencing
Language:C++ 726
smaegol / PlasFlow
Software for prediction of plasmid sequences in metagenomic assemblies
classification prediction contigs plasmid fasta plasmid-sequences tensorflow metagenome-assembly metagenome metagenomes plasmids plasflow
Language:Python 94
leylabmpi / DeepMAsED
Deep learning for Metagenome Assembly Error Detection
metagenomics deep-learning bioinformatics metagenome-assembly
Language:Jupyter Notebook 25
metaTOR
koszullab / metaTOR
Metagenomic binning based on Hi-C data
metagenomics hi-c 3c metagenomic-pipeline metagenome-assembly louvain-community-detection
Language:Python 22
leylabmpi / resmico
Identifying misassemblies via deep learning
bioinformatics deep-learning metagenome-assembly metagenomics
Language:Jupyter Notebook 10
marbl / binnacle
Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
binning changepoint-detection metagenome-assembled-genomes metagenome-assembly metagenomics scaffolding
Language:Python 10
karkman / physalia_metagenomics
Environmental metagenomics, Spring 2021, Physalia Courses
metagenomic-data metagenome-assembly bioinformatic-approaches microbial-communities
Language:R 7
microbiomedata / metaAssembly
Workflow for metagenome assembly
workflow assembly metagenome-assembly wdl wdl-workflow
Language:WDL 4
danielapierro / blobtools_tutorial
Create a blobplot of a holobiont assembly without a reference genome. Example code and data are provided.
metagenome-assembly taxonomic-analysis holobiont metatranscriptome-assembly
Language:Perl 2
leylabmpi / animal_gut_metagenome_assembly
Code associated with the Ley Lab animal gut metagenome assembly project
bioinformatics metagenome-assembly metagenomes research-project
Language:Jupyter Notebook 2
raw-lab / metaome_stats
Statistical package for metaome denovo assembly results.
metaome-stats fasta genome metagenome metagenome-assembly metatranscriptomics transcriptomics
Language:Python 2
lauralwd / Azolla_genus_metagenome
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
azolla symbiosis metagenomes plant metagenomics metagenomic-pipeline metagenome-assembly snakemake conda bioconda bioinformatics bioinformatics-pipeline biological-data-analysis fair-data endophytes symbiont
Language:Python 1
bfosso / SDATA_bio_Desc
Description of the bioinformatic workflow applied in Passaro et al 2019
metagenomics virus tumor metagenome-assembly
0
reslp / binner
Run multiple metagenome filtering programs using Docker containers
binner metagenome blobtools genome metagenome-assembly busco quast multiqc metabat multiple-binners
Language:Shell 0