pirovc's repositories
genome_updater
Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy
ganon_benchmark
benchmarking scripts for ganon
binpacking
Aims at optimal distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.
bioconda-recipes
Conda recipes for the bioconda channel.
ContamFilter
Implements NCBI Contamination Screen Publicly in CWL
DecontamManuscript
Reprocible analyses accompanying the paper introducing the decontam method
Frontiers_2017
Supplement for Frontiers article
kmer_counting
Contains the source code for the new k-mer counting algorithm
lca-1
Quick lowest-common-ancestor queries using sparse tables.
scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
seqan
SeqAn's official repository.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks