metagenome-assembled-genomes

There are 1 repository under metagenome-assembled-genomes topic.

bakta
oschwengers / bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
bioinformatics microbial-genomics genome-annotation bacteria bacterial-genomes plasmids metagenome-assembled-genomes annotation mag
Language:Python 404
WrightonLabCSU / DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
bioinformatics genomics metagenome-assembled-genomes metagenomics viral-genomics viral-metagenomics annotation microbiome
Language:Python 238
franciscozorrilla / metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
metagenomics computational-biology metabolic-models gut-microbiome snakemake metagenome-assembled-genomes mags metabolism bioinformatics flux-balance-analysis genome-scale-metabolic-model metabolic-modeling microbial-ecology microbiome systems-biology
Language:Python 173
ayixon / RaPDTool
Rapid Profiling and Deconvolution Tool for Metagenomes
bioinformatics metagenomics metagenome-assembled-genomes microbial-taxonomy
Language:Python 111
Serka-M / mmlong2
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
bioinformatics metagenomics metagenome-assembled-genomes nanopore pacbio long-read-sequencing microbial-genomics microbiome
Language:Python 33
marbl / binnacle
Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
binning changepoint-detection metagenome-assembled-genomes metagenome-assembly metagenomics scaffolding
Language:Python 9
Serka-M / mmlong2-lite
Lightweight bioinformatics pipeline for microbial genome recovery
bioinformatics long-read-sequencing metagenome-assembled-genomes metagenomics microbial-genomics microbiome nanopore pacbio singularity-container snakemake-workflow
Language:Python 4
ohmeta / oral-assembly
Human oral metagenome-assembly-genome
microbiome metagenome-assembled-genomes
Language:Jupyter Notebook 2
tli14 / PanMAGs
Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness
pan-genome metagenome-assembled-genomes
Language:R 2
cumbof / MetaSBT
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
genomes metagenome-assembled-genomes sequence-bloom-trees metagenomics bioinformatics microbial-genomics
Language:Python 1
cumbof / MetaSBT-DBs
MetaSBT public databases
databases metagenome-assembled-genomes metagenomics reference-genomes sequence-bloom-trees
Language:Shell 0
hildebra / clusterMAGs
clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
metagenome metagenome-assembled-genomes metagenome-binning
Language:C++ 0
rajaldebnath / Code-documentation
Project code documentation
bash-script data-science data-visualization ggplot2 metagenome-assembled-genomes microbiome-analysis python r rscript statistics-modeling
Language:Jupyter Notebook