fredericlemoine

golaxy

golaxy : interacting with Galaxy in Go

rna-pipeline

RNA-Seq pipeline with nextflow and docker

reprohackathon_ismb2023

snag

SequeNce simulAtion in Golang

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

bammask

bioconda-recipes

Conda recipes for the bioconda channel.

bitset

Go package implementing bitsets

cobrashell

condor

ConDor: a workflow to detect convergent evolution in large protein alignments

configs

Config files used to define parameters specific to compute environments at different Institutions

covseqclade

date2epiweek

Essai2

fastqutils

FR-RN

French Reproducibility Network website

godocker

gostats

gota

Gota: DataFrames and data wrangling in Go (Golang)

Integron_Finder

Bioinformatics tool to find integrons in bacterial genomes

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nextflow

A DSL for data-driven computational pipelines

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

PASTML

Prediction of Ancestral STate using the Maximum-Likelihood method

phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

s3lib

Seq-Gen

Sequence simulator

SpliceLauncher

RNAseq pipeline for alternative splicing junctions

Strainline

Full-length de novo viral haplotype reconstruction from noisy long reads

viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples