dmalzl

Daniel Malzl's repositories

A python library to fetch metadata from NCBI and MetaSRA for a list of NCBI accessions and data extraction from ARCHS4

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A python library for creating alluvial diagrams

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De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

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An easy to use tool to count hashtag oligos from 10x cellranger output

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An easy to use tool to generate heatmap like tracks for the UCSC Genome Browser

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Example workflow illustrating how to use nextflow in sequence data analysis

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jupyter notebooks for the course mathematisches programmieren

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MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

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Generic Nextflow processes for next-generation sequencing data analysis

MIT000

A repository containing code for the practical in numerical mathematics

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An easy to use python tool for fast sequence data demultiplexing

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Concise, consistent, and legible badges in SVG and raster format

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A bit of code to interconvert objects between the Seurat and RISC environments for scRNA-seq data analysis

Language:RMIT010