Marc Schwering's repositories
prevailing-winds
Webapp for planning your sailing holidays. Interactive map showing windroses of historic winds. Could also be useful for surfers, paragliders, pilots and more.
ankerwache
A simple mobile anchor watch... without advertisement and data collection.
pytorch_lightning_test
I was trying to find a good pattern for some problems using pytorch-lightning with tensorboard and optuna.
shiny_nginx_boilerplate
Setting up R shiny with a webserver using docker-compose.
circleci-integration-test
Testing circleci pipelines
magic-soup
MagicSoup is a game that simulates cell metabolic and transduction pathway evolution. Define a 2D world with certain molecules and reactions. Add a few cells and create evolutionary pressure by selectively replicating and killing them. Then run and see what random mutations can do.
shinyTools
Some modules for shiny.
fastapi_alembic
Putting together a fastAPI app with SQLAlchemy and Alembic for database management.
fastq_extractor_proof_of_principle
a place to make proof of principle and benchmark various own fastq parser / extractors optimized for speed
CRISPRAnalyzeR
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens. Implemented as R shiny app.
lambda_graphql
Serve GraphQL API with AWS Lambda and API Gateway. This is much nicer than a conventional REST API deployed the same way.
RBDpredict
R package for unbiased enigm RNA-binding protein (RBP) prediction based on shrinkage discriminant analysis. Enigm RBPs have been found to make up for one half of all RBPs.
HighchartsWidget
HTML widget for using highcharts in R with >100k data points which can be difficult using plain highcharter.
mRcSchwering
GitHub profile README
rest-in-peace
GraphQL API using python Ariadne and starlette with SQLAlchemy and Alembic for database management.
scRNAseq_batchEffects
Analyzing batch effects in single cell RNA sequencing (scRNA-seq) analysis and predicting their impact on downstream analysis.