circrna-prediction

There are 0 repository under circrna-prediction topic.

iprada / Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
circrna circrna-prediction circrnas circular-dna eccdna ecdna genotyping microdna ngs structural-variation
Language:Python 62
nf-core / circrna
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
bioinformatics circrna circrna-pipeline circrna-prediction circular-rna genomics mirna mirna-targets nextflow nf-core ngs pipeline rna-seq workflow
Language:Nextflow 43
PSSUN / CircCode
A Python3-base pipeline for translated circular RNA(circRNA) identification
bioinformatics circrna circrna-prediction python ribosome-profiling-data
Language:Python 14
lanbiolab / KGANCDA
KGANCDA is effective to predict associations between circRNA and cancer, which is based on knowledge graph attention network. The detail of the paper will be released in this page after the paper accepted.
knowledge-graph graph-neural-networks circrna-prediction circrna-disease-prediction attention-mechanism
Language:Python 9
CRAFT
annadalmolin / CRAFT
CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.
bioinformatics circrna-prediction mirna-mrna-interaction open-reading-frame rna-binding-proteins
Language:RMarkdown 8
johnlcd / CIRCScan
Toolkit for circRNA prediction by machine learning
circrna-prediction machine-learning epigenomics
Language:R 6
daaaaande / auto_find_circ
automating find_circ
circular rna circrna-prediction bowtie2 perl
Language:Perl 1
cgodatascience / circRNA
Classification of RNA-Seq samples using circRNA expression
circrna circrna-prediction rna-seq rna-seq-analysis fastq fastqc fastp multiqc fastq-dump rna-seq-pipeline machine-learning rna-seq-classification
Language:HTML 0

circrna-prediction

iprada / Circle-Map

nf-core / circrna

PSSUN / CircCode

lanbiolab / KGANCDA

annadalmolin / CRAFT

johnlcd / CIRCScan

daaaaande / auto_find_circ

cgodatascience / circRNA