sturkarslan

network-portal-old

Network Portal related files

R-scripts

R script Files

regulon-vis

a set of visualizations for the halo bacteria regulon project

CBASS84

analysis workflow and scripts for CBASS84 manuscript

cdi

Computational tools to understand bortezomib resistance.

evolution-of-syntrophy

Code and data related to analysis of genomics data

miner2

Mechanistic Inference of Node-Edge Relationships (MINER)

MSB-16-7058

Supporting files for manuscript Turkarslan et al., MSB-16-7058

RNASeq-Analysis

Custom workflow for analysis of RNAseq data

single-cell-variant-calling

Scripts for single cell variant calling

difference

Pipeline to call variant callers

DuffyNGS

DuffyNGS – alignment and peak calling of ChIP-seq data

DuffyTools

Custom R package for ChIP-seq peak filtering

GbmMINER

kallisto-tximport-deseq2

miner3

miner written in python 3

network_portal

A web-app for archiving and exploring gene-regulatory networks.

portal_scripts

rnaseq_starsalmon_slurm

RNA-Seq pipeline based on STAR Salmon for SLURM clusters

sequence_analysis

Scripts related to NGS Data analysis

Sequencing

Genomic sequence analysis tools

single-cell-analysis

Scripts related to single cell analysis

summer-internship-2022

Test

wp-mmapi

Wordpress plugin to consume mmapi