bionlp
There are 6 repositories under bionlp topic.
ncbi-nlp / BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
Language:Jupyter Notebook 552BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
Language:Python 274abachaa / Existing-Medical-QA-Datasets
Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems
- covid-papers-browser
gsarti / covid-papers-browser
Browse Covid-19 & SARS-CoV-2 Scientific Papers with Transformers 🦠📖
Language:CSS 182 cambridgeltl / sapbert
[NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
Language:Python 156jakelever / kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
Language:Python 154medmcqa / medmcqa
A large-scale (194k), Multiple-Choice Question Answering (MCQA) dataset designed to address realworld medical entrance exam questions.
Language:Jupyter Notebook 131DUTIR-BioNLP / Taiyi-LLM
Biomedical LLM, A Bilingual (Chinese and English) Fine-Tuned Large Language Model for Diverse Biomedical Tasks
Language:Python 112- Language:Python 112
Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019
Language:Python 50- Language:Python 47
- Language:GAP 47
Corpus of Online Medical EnTities: the cometA corpus
Language:Jupyter Notebook 45- Language:Python 41
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
Language:R 40- Language:Jupyter Notebook 40
datquocnguyen / BioPosDep
Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)
Language:Python 32bionlp-hzau / BioNLP-Corpus
Repository used to collect biomedical corpus on the Internet!
- Language:Python 30
- Language:Python 27
- Language:Python 21
- Language:Python 20
Bohdan-Khomtchouk / biosemble
AI assembly of bioNLP wordnets
Language:Python 19suamin / MIL-RBERT
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
Language:Python 19biomedicalinformaticsgroup / cadmus
A full-text article retrieval pipeline for biomedical literature.
Language:Python 17Biomedical wordlists (of drugs, genes, etc) for several text mining projects
Language:Python 16PKPDAI / PKDocClassifier
Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo
Language:Python 15- Language:Python 12
- Language:Python 10
This code is to run MetaMap in parallel using Python.
Language:Python 8- Various-documents
Anthony9624 / Various-documents
Various documents for deep Learning(Continually updated)
dmis-lab / bioner-generalization
How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?
Language:Python 6- Language:Python 6
- Language:Python 5
miladnouriezade / Ktrain-BioBert_NER
This repository contains data and BioBert based NER model monologg/biobert_v1.1_pubmed from community-uploaded Hugging Face models for detecting entities such as chemical and disease.
Language:Python 4
