Englander Institute for Precision Medicine's repositories
hello-mess-nf
A Nextflow pipeline to experiment with DSL2 + Zero Mess
bridge2ai-redcap
Bridge2AI Voice | REDCap
cnn-smoothie
Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images
unity-workshop
R Lab XR in Healthcare Unity Workshop
bioinformatics
Tool including several common bioinformatics software applications
hello-nextflow
An hello world pipeline to test nextflow installations.
paper_trail
Track changes to your models' data. Good for auditing or versioning.
rnaseq-messaging
RNAseq pipeline to demonstrate use of messaging
stork-v
This project aims to enhance the assessment of fertilized human embryos, a critical step in the process of in vitro fertilization (VF). The research paper behind this project introduced BELA, the Blastocyst Evaluation Learning Algorithm, a novel model for embryo ploidy status prediction.
bowtie2
A fast and sensitive gapped read aligner
omero-server-docker
EIPM fork of OMERO.server production docker image, with OMERO.dropbox support added.
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
SalmonTE
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
STRIDES
Supporting the Azure + NIH STRIDES initiative