ONTOX's repositories
ontox-phymdos
Phymdos - the ONTOX Physiological maps documentation software
aop-ontology
Adverse Outcome Pathway Ontology
AOPWikiRDF
This repository contains code for the AOP-Wiki XML-to-RDF conversion and guidance to deploy a Virtuoso SPARQL endpoint Docker image that is loaded with the AOP-Wiki RDF
aspis4j
an api for the ontox4j graph database
CiRA
System behavior is often expressed by causal relations in requirements (e.g. if event 1 then event 2). Automatically extracting this embedded causal knowledge supports not only reasoning about requirements dependencies, but also various automated engineering tasks such as seamless derivation of test cases. However, causality extraction from natural language (NL) is still an open research challenge as existing approaches fail to extract causality with reasonable performance.
ebc_test
A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you to perform co-clustering on very large, sparse, N-dimensional matrices.
L1000_DILI
Use transcriptomics from LINCS L1000 to predict DILI
ontoxRcourse
The course materials for the ONTOX Introduction into R and AI course
ontoxRepRes
This repo contains the workshop materials for the ONTOX Workshop on Reproducible Ressearch
rs-srvc
Version control software for systematic reviews
BioMedR
generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.
dl-keras-tf
rstudio::conf(2020) deep learning workshop
kGCN
A graph-based deep learning framework for life science
mustard
mustard - Machine learning Using Svms To Analyse Rdf Data
pubmed-downloader
Downloads the entire pubmed abstracts
raspis
This is the repo for writing code and workflows to work with the complete ASPIS compound dataset. This is an R package containing the ASPIS chemcials as a dataset
Reticulate_NHS_R_Community
A deep dive into the world of R and Python integration.
RNeo4j
Neo4j Driver for R.
srvc-template
A template repository for srvc projects
text_gcn
Graph Convolutional Networks for Text Classification. AAAI 2019