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Jefferis Lab (jefferislab)

Jefferis Lab

jefferislab

Geek Repo

Location:Cambridge, UK

Home Page:http://jefferislab.github.io/

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Jefferis Lab's repositories

RANN

R package providing fast nearest neighbour search (wraps ANN library)

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BridgingRegistrations

Bridging registrations to convert between different Drosophila template brains

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NBLAST_on-the-fly

Web application demonstrating NBLAST neuron similarity/search

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MakeAverageBrain

Make average template brains using CMTK’s avg_adm tool

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jlabvisuals

A repo for visual materials used in lab papers, presentations and posters

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LHlibrary

A R Shiny app for sharing and viewing lateral horn data

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2018lhsplitcode

Analysis code for 2018 split paper

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catnat

neuroanatomy toolbox – CATMAID extension functions

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DrosophilidBridgingRegistrations

Bridging registrations to convert between different Drosophila species template brains

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ImageJMacros

General Jefferis Lab ImageJ macros – e.g. split lsms

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lhns

A repository for neuron data related to the fly lateral horn

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MirrorRegistrations

Mirroring points in various Drosophila melanogaster template brain spaces

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physplit.analysis

Packaged and versioned Analysis functions for Shahar's cells

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2023_cVA_Taisz_Galili

Public code for Taisz, Galili et al. (2023)

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drvid

Access to DVID API

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jimpipeline

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skeleton-to-MIP

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bftools

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bridging_on-the-fly

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familynblast

NBLAST to identify neuron families and subfamilies

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flybrainenv

Shared login scripts and other configuration info for the lmb linux cluster

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flycircuitreg

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flywatch

Code to analyse movies of flies – principally based on Yoshi Aso's (Janelia) behaviour rig

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LHN_Tracings

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lhnsold

Skeleton data for neurons associated with the lateral horn of Drosophila melanogaster

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MicroManagerStrobePlugin

A plugin developed for MicroManager / ImageJ to coordinate pulsed LED illumination with image acquisition

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NBLAST_clusters_online

Explore clusters from Costa et al. (2014) NBLAST: Rapid, sensitive comparison of neuronal structure and construction of neuron family databases, online in 3D

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nblastwwwjb

Jekyll bootstrap version of nblast website

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physplitdata

shahar's versioned raw data and db dump

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V2LH-R

Some analysis associated with studies of MB-V2a neurons

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