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maranasgroup

maranasgroup

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maranasgroup's repositories

CatPred

Machine Learning models for in vitro enzyme kinetic parameter prediction

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dGPredictor

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NN_MM-GBSA_CoV2

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novoStoic2.0

novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection

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EnzRank

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kcat-km

Predictive models for estimating kcat and km of enzymes from sequence/structure information

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optstoic-python

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Protein-InDelMaker

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dGPredictor-py2

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SteadyState-MFA

Genome scale steady state 13C metabolic flux analysis

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CNN_seq_CoV2

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k-ctherm138

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K-FIT

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KETCHUP

Kinetic Estimation Tool Capturing Heterogeneous Datasets Using Pyomo (KETCHUP)

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scRBA

S. cerevisiae Resource Balance Analysis model

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SNPeffect

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uncFBA

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iCTH669

Repository for the Stoichiometric Genome-Scale Model (GSM) of Clostridium thermocellum

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optstoic-gams

optStoic-minFlux/minRxn code for PMID: 26530953

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CatPred-DB

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chemo-enz

Expanding chemical synthesis planning to explore chemo-enzymatic pathways using minimal transitions

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DMMM

Dynamic multi-species metabolic modeling of Clostridia co-culture

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ensembledocking

Codes for ensemble docking

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iIsor_memote

Repository for Issatchenkia orientalis SD108 genome-scale metabolic model iIsor

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iPotri3463

This repository contains multi-tissue metabolic models of populus trichocarpa

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iRhto_memote

Memote-created repository for Rhodosporidium toruloides model iRhto

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iSace_GSM

Repository of a genome-scale metabolic model for Saccharomyces cerevisiae

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k-sacce306

K-FIT kinetic models for Saccharomyces cerevisiae CEN.PK and BY4741

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UCYN-A-symbiosis-metabolic-modeling

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yeastsMFA

Repository for yeasts MFA related files

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