Jean-Christophe Lachance's repositories
bigg_models_data
The flat files for the BiGG Models website
BiGMeC
BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
build_model
Example model reconstruction and analysis scripts
COGfinder
Python package to find the Cluster of Orthologous Groups (COG) categories for every gene in a fasta files(s)
cookiecutter-memote
A cookiecuttter template for memote model repositories
escher
Build, view, share, and embed pathway maps.
etfl
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
MinimalGenome
MinGenome: An in silico top-down approach for the synthesis of minimized genomes.
oxidizeme
OxidizeME model and notebooks
pytfa
A Python 3 implementation of Thermodynamics-based Flux Analysis
solvemepy
solveME public repository
y-ome
A workflow to define the Y-ome for E. coli K-12 MG1655
yeast-GEM
The consensus GEM for Saccharomyces cerevisiae