nyuhuyang

scRNAseq-SSCs

Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data

scRNAseq-BladderCancer

Collaboration with David Mulholland at Mount Sinai for invasive Bladder Cancer

scRNAseq-LungCancer

single cell RNA-Seq analysis of human lung cancer. Data from Vivek Mittal <vim2010@med.cornell.edu> and postdoc Sharrell B. Lee <sbl2002@med.cornell.edu>

scRNAseq-GBM

RNAseq_pipeline

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

scRNAseq-Ibrutinib

pyShinyCell

scRNAseq-BladderCancerImmune

scRNAseq-Lung

Collaboration with Renat Shaykhiev (res2003@med.cornell.edu) for lung development project

SeuratExtra

extend functions to support Seurat

docs

Dropbox-Uploader

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

interview

interview questions

nyuhuyang

Config files for my GitHub profile.

scATAC_scRNA-seq

Collaborate with David Falvo (daf2042@med.cornell.edu) and Rohit Chandwani (daf2042@med.cornell.edu)

scRNAseq-AIM

scRNAseq-Histiocytosis

Collaborated with professor Frederic Geissmann(geissmaf@mskcc.org),Rocio Vicario(vicarior@mskcc.org), Maria Pokrovskii(mpokrovskii@gmail.com)

scRNAseq-HIV

collaborate with Micheal Corley for HIV single-cell human specimen

scRNAseq-Lorenzo-LS-9829

scRNAseq-Lung-Cancer

Atlas of cellular heterogeneity along the proximal-distal airway axis of human lung and lung cancer

scRNAseq-MCL

single cell RNA seq analysis for Mantle Cell Lymphoma

scRNAseq-MCL_TCR_BCR

mantle cell lymphoma with single cell RNA-seq, scRNAseq-TCR and scRNAseq-BCR

scRNAseq-PBMC-IBD

collaborate with Randy Longman <ral2006@med.cornell.edu>

scRNAseq-SSC

Collaboration with Marco Seandel, M.D., PhD. (mas9066@med.cornell.edu)

seurat-wrappers

Community-provided extensions to Seurat

snRNAseq-Alzheimer

collaboration with Rocio Vicario (vicarior@mskcc.org)

snRNAseq-COVID_testis

collaborate with Miguel Brieno-Enriquez brienoenriquezma@mwri.magee.edu

snRNAseq-macrophages

Collaboration with Cox, Nehemiah/Sloan Kettering Institute <coxn@mskcc.org> for Diet-regulated macrophages research

tradingview-alpaca-strategy-alert-webhook-heroku