Ajinkya Kulkarni (ajinkya-kulkarni)

ajinkya-kulkarni

Geek Repo

Company:Max Planck Institute for Multidisciplinary Sciences

Location:Göttingen, Germany

Home Page:https://orcid.org/0000-0003-1423-3676

Twitter:@redklavier

Github PK Tool:Github PK Tool


Organizations
zwicker-group

Ajinkya Kulkarni's repositories

PyTextureAnalysis

PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degree of coherence, and structure tensor of an image. This package is built using NumPy, SciPy and OpenCV.

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PyHistology

Python package that uses colorspace-based segmentation to analyze histopathology images.

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MPINAT-LSM-Application

Streamlit app for scientific data management at the Max Planck Institute for Multidisciplinary Sciences.

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PyFlocking

Simulations of flocking behaviour in active agents, using a simple Viscek model

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PyBlendPatches

Efficiently handles large images by segmenting them into patches, performing instance/semantic segmentation, and then reconstructing the patches into a complete, segmented mask.

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PySpatialHistologyAnalysis

Package using StarDist and Python that performs object detection and spatial analysis on H&E images

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PyElispotAnalysis

Detecting spots (IFN-Gamma positive cells) from an Elispot assay image

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PyOrganoIDNet

This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1

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ajinkya-kulkarni

Config files for my GitHub profile.

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cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

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cerberus

One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification

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cleanvision

Automatically find issues in image datasets and practice data-centric computer vision.

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EmbedSeg

Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images

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iguana

Interpretable Gland-Graph Networks

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MEDIAR

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

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micro-sam

Segment Anything for Microscopy

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PyComplexHeatmap

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

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quantixed

My GitHub profile

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segmentation_metrics

A package to compute medical segmentation metrics.

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spotiflow

Accurate and efficient spot detection for microscopy data

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stardist

StarDist - Object Detection with Star-convex Shapes

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visa_rescheduler

US VISA (ais.usvisa-info.com) appointment re-scheduler - Colombian adaptation

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