Ajinkya Kulkarni's repositories
PyTextureAnalysis
PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degree of coherence, and structure tensor of an image. This package is built using NumPy, SciPy and OpenCV.
PyHistology
Python package that uses colorspace-based segmentation to analyze histopathology images.
MPINAT-LSM-Application
Streamlit app for scientific data management at the Max Planck Institute for Multidisciplinary Sciences.
PyFlocking
Simulations of flocking behaviour in active agents, using a simple Viscek model
PyBlendPatches
Efficiently handles large images by segmenting them into patches, performing instance/semantic segmentation, and then reconstructing the patches into a complete, segmented mask.
PySpatialHistologyAnalysis
Package using StarDist and Python that performs object detection and spatial analysis on H&E images
PyElispotAnalysis
Detecting spots (IFN-Gamma positive cells) from an Elispot assay image using Deep learning
PyOrganoIDNet
This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1. Demo application available at https://segmentorganoids.streamlit.app/
ajinkya-kulkarni
Config files for my GitHub profile.
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
cerberus
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
cleanvision
Automatically find issues in image datasets and practice data-centric computer vision.
EmbedSeg
Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
iguana
Interpretable Gland-Graph Networks
MEDIAR
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
micro-sam
Segment Anything for Microscopy
PyComplexHeatmap
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
quantixed
My GitHub profile
segmentation_metrics
A package to compute medical segmentation metrics.
spotiflow
Accurate and efficient spot detection for microscopy data
stardist
StarDist - Object Detection with Star-convex Shapes
visa_rescheduler
US VISA (ais.usvisa-info.com) appointment re-scheduler - Colombian adaptation