Dr. FAN, Xiaohui's repositories
bulk2space
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
scCATCH_performance_comparison
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
scDeepTalk
Infer cell-cell communications based on feed-forward neural network
scCrossTalk
Infer cell-cell communications based on CellTalkDB
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.