CNR-IBBA's repositories
shiny-server
Shiny Server @CNR-IBBA
dockerfiles
A useful repository for Docker file
IMAGE-InjectTool
Load IMAGE data into BioSample
BIOINFO-guidelines
Bioinformatic Guidelines @ IBBA-CNR
r-smarter-api
R code to query SMARTER-backend
IMAGE-ansible
Ansible configuration for image server
IMAGE-DiversityBrowser
Manage code for IMAGE Diversity Browser
IMAGE-Portal
IMAGE Data Portal - Frontend code for IMAGE Data Portal and API
nf-neestimator
A nextflow pipeline for Current Effective Population Size (Ne) calculations with bootstrapping
nf-treemix
A nextflow pipeline which executes treemix on a population of interest
nf-treeseq
Nextflow pipeline to convert genotype data into Tree Sequences
SMARTER-backend
SMARTER Backend API
SMARTER-database
Smarter database repository
SMARTER-frontend
SMARTER Database frontend
IMAGE-CommonDataPool
IMAGE Common Data Pool - PostgreSQL, metadata structure and data loading scripts
IMAGE-genotype
EVA submission guideline and the import script
IMAGE-metadata
IMAGE metadata definitions
IMAGE-ValidationTool
IMAGE Validation Tool component of the IMAGE Inject Tool
nf-chip-alignment
Align chip probes to a reference genome
nf-modules
Custom Nextflow DSL2 modules
nf-resequencing-mem
Nextflow resequencing pipeline with bwa-mem and freebayes
SMARTER-repository
SMARTER Data Repository
svevo-hapflk
Hapflk analysis of durum wheat
svevo-permutations
Permutations for Fst calculations in durum wheat genetics