Andrea Guarracino's repositories
1000G-ONT-F100-PGGB
PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium
DataStructuresForBioinformatics
Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata
seqrequester
A tool for summarizing, extracting, generating and modifying DNA sequences.
ReferenceGraphPangenomeDataAnalysisHackathon2023
Material for the Reference Graph Pangenome Data Analysis Hackathon 2023, November 13-17 in Cape Town, South Africa
StainedGlass
Make colorful identity heatmaps of genomic sequence
andreaguarracino.github.io
Curriculum Vitae
gafpack
convert variation graph alignments to coverage maps over nodes
human-pangenome-project
Human Pangenome Project
impg
implicit pangenome graph
lifetree
hard mode all genomes alignment
meryl
A genomic k-mer counter (and sequence utility) with nice features.
panacus
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
T2T-Polish
Evaluation and polishing workflows for T2T genome assemblies
tabixpp
C++ wrapper to tabix indexer
vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings