codon-bias
There are 0 repository under codon-bias topic.
- CodonU
SouradiptoC / CodonU
A python project for analysis of codon usage for gene or genome analysis
Language:Python 16 rhondene / Codon-Usage-in-Python
Python3 implementation of commonly used codon usage statistics
Language:Python 10tdseher / simple-codon-optimizer
Simple Python program to perform codon optimization or heterology calculations.
Language:Python 8- Language:R 6
alondmnt / codon-bias
Python package of codon usage bias analysis tools
Language:Python 5MATLAB package for codon usage bias and NGS analysis
Language:MATLAB 5- Language:Python 4
HallemLab / Wild_Worm_Codon_Adapter
Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables
Language:R 1stracquadaniolab / cubseq-nf
CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
Language:R 1webermarcolivier / codon_usage_oncogenes
Analysis of codon usage in oncogene families.
Language:Jupyter Notebook 1juanvillada / H_bonds_ramp
Research on position-dependent hydrogen bonds per codon
Language:R 0MPurushothamRao / Codon-Optimiser-by-codon-bias
It is simple codon optimiser by using codon bias and usage
Language:Python 0skchronicles / CodonBias
The following files and programs were used to investigate simulated (in silico) codon bias from pseudo-randomly generated sequences versus PCC7120 DNA condon bias. Several large differences were observed between the codon frequencies of the simulated and actual PCC1720 DNA.
Language:Python
