MIRTK

MIRTK

Geek Repo

Packages for the Medical Image Registration ToolKit of the BioMedIA group

Location:London, UK

Home Page:https://github.com/BioMedIA/MIRTK

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MIRTK's repositories

DrawEM

Developing brain Region Annotation With Expectation-Maximization

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Deformable

Deformable shape module with focus on neonatal cortex reconstruction.

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Viewer

The companion viewer for MIRTK, known as rview as part of IRTK.

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BAtCh

Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow

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CorticalSurfaceEvaluation

App for manual evaluation of reconstructed cortical surfaces.

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LBFGS

libLBFGS: a library of Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS)

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MALPEM

Work in progress, use original package of Christian Ledig in the meantime.

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NIFTI

NIfTI C library from http://nifti.nimh.nih.gov/pub/dist/src/

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REPEAT

REgistration PErformance Assessment Tools

Scripting

Scripting utilities of the Medical Image Registration ToolKit (MIRTK).

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Boost

Boost header files required by Medical Image Registration ToolKit (MIRTK).

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Eigen

Eigen header files required by Medical Image Registration ToolKit (MIRTK).

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GIFTI

GIFTI C library from https://www.nitrc.org/projects/gifti/

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Mapping

Brain mapping module of the Medical Image Registration ToolKit (MIRTK).

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MetaIO

MetaImage is the text-based tagged file format for medical images that resulted. We have now extended that file format to support a variety of objects that occur in medicine such a tubes (for vessels, needles, etc.), blobs (for arbitrary shaped objects), cubes, spheres, etc. The complete library is known at MetaIO.

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mirtk.github.io

Online documentation of Medical Image Registration ToolKit (MIRTK)

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