tahiri-lab

tahiri-lab's repositories

aPhyloGeo

aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.

Language:ShellMIT9 3 2

aPhyloGeo-pipeline

Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree

Language:PythonMIT7 10

This generator can be used to generate a specified number of phylogenetic trees (or clusters of trees in the cluster version) in Newick format with a variable number of leaves and with some level of overlap between trees in clusters.

Language:Jupyter NotebookMIT2 20

iPhyloGeo

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KMeansPhyloTreesClustering

Language:C++MIT2 1 1

phyDBSCAN

phyDBSCAN: Building alternative phylogenetic trees using DBSCAN and Robinson and Foulds distance

Language:C++MIT2 10

py_madaclim

A simple Python API to interact with the Madaclim database

Language:PythonMIT2 10

QSAR

QSAR Predictive Modeling for Evaluating Contaminant Transfer

Language:Jupyter NotebookMIT1 1 28

alignClust

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aPhyloGeo_plus_plus

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CovidEvoML

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iPhyloGeo.js

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KMeansSuperTreeClustering

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PhyloClust

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PrimConsTree

Language:Jupyter NotebookMIT000

source-code

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super-RF

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aPhyloGeo.sm

Host-Virus Cophylogeny Trajectories: Investigating Molecular Relationships between Coronaviruses and Bat Hosts

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aPhyloGeoML

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KNCL

A solution designed to complete 2 phylogenetic trees defined on different but mutually overlapping sets of taxa on the union of their taxa sets and compute the Branch Score Distance between the completed phylogenetic trees.

Language:PythonGPL-3.0000

scipy_proceedings

Tools used to generate the SciPy conference proceedings

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testaphylogeo

test aphylogeo package

Language:Python000