camayal

treetom

Develop repo for TreeToM

colector

Repo for ColectoR, a digital field notebook for voucher specimen collection for smartphones

colector-AT-AppInventor

ColectoR is a free assistant for botanist field trips, to help to manage big amounts of data from each specimen collected using any Android smartphone based. ColectoR contain the most used fields by botanist in the label for their collections. This application use sensors in each smartphone like GPS, altimeter, allowing integrate this information.

DMISimulations

Reproducibility documentation of "Genetic incompatibilities do not snowball in a demographic model of speciation"

admixture-viburnum

Reproducibility repository for Genetic architecture underlying the parallel evolution of leaf syndromes in Viburnum

alignment2hdf5

A simple script to convert fasta and nexus alignments into HDF5 databases compatible with Superbpp, ipyrad and ipyrad analysis

AutoABBA

Botany2021_DLworkshop

bpp2snapp

Converter bpp result into snapp input

Datataxa

Extract information and classify it from GenBank for a list of species, using Entrez API

dmiGenerator

Dobzhansky and Muller incompatibilities list generator

camayal.github.io

chaya_morphometrics

kmerkit

Testing scripts for kmer research

OnScreeM

Very simple on screen ruler in Python to take measurements on the fly from the screen.

Orienotinus-phylogeny

otatea-repo

Others

Other stuff (mainly not biologically related)

phylogenetic-data-science

Phylogenetic Data Science Course

Some-Scripts

Repository for different one-file scripts (Phylogenetics, Bioinformatics, Name managers, etc.)

southern-oreinotinus

Reproducibility repository for: Caught in the Act: Incipient Speciation at the Southern limit of Viburnum in the Central Andes

sysmexrev

Reproducible science for The Mexican flora as study case in systematics (Taxonomy, Phylogenetics and Evolution); GenBank’s accession meta analysis

TORCH-meeting-2024

trees_beetles_ver