beta-diversity

There are 0 repository under beta-diversity topic.

shawnlaffan / biodiverse
A tool for the spatial analysis of diversity
beta-diversity biodiverse endemism hacktoberfest phylodiversity phylogenetic-diversity phylogenetic-trees phylogeography randomisations spatial-analysis species-turnover
Language:Perl 73
vallenderlab / MicrobiomeR
A comprehensive and customizable R package for microbiome analysis.
microbiome microbial-genomics microbiome-analysis phyloseq metacoder r rstats visualization color-palette bioinformatics permanova alpha-diversity beta-diversity pcoa comprehensive metagenomics microbiology
Language:R 18
vmikk / PhyloNext
A pipeline for phylogenetic diversity analysis of GBIF-mediated data
beta-diversity biodiverse endemism phylodiversity phylogenetic-diversity r randomisations docker gbif nextflow singularity
Language:R 8
Brochado-Kith / microbiome_analysis
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
16s alpha-diversity beta-diversity microbiome microbiome-analysis microbiome-workflow phyloseq rstudio shinny beta diversity metagenomic-pipeline
Language:R 3
iliapopov17 / The-shadow-of-HIV
Repository for course project in Bioinformatics Institute 2023-2024
snakemake alpha-diversity beta-diversity differential-abundance-analysis dna hiv relative-abundances bowtie2 kraken2 maaslin2 samtools iontorrent
Language:Jupyter Notebook 3
valentinitnelav / bootdissim
R package for building turnover saturation curves via bootstrapping
turnover beta-diversity ecological-network ecological-modelling r ecology pollination resample rarefaction biodiversity conservation
Language:R 2
PaRaVis
mmadrz / PaRaVis
parallel, efficient and ensemble analysis of Rao's Q spectral diversity using remote sensing datasets.
analysis beta-diversity parallel remote-sensing spectral-diversity visualization
Language:Jupyter Notebook 1
shivankurkapoor / microbiome-data-analysis
Microbiome Data Analysis
microbiome-analysis data-science beta-diversity alpha-diversity beta-regression
Language:Python 1
abarghi / Diversity_Using_Vegetarian_and_Tidyverse
Alpha, beta and gamma diversities are computed and visualized using formulas and using the R package vegetarian.
vegetarian-r-package tidyverse ecology alpha-diversity beta-diversity gamma-diversity
Language:Jupyter Notebook 0
abarghi / Measuring_Linguistic_Diversity
alpha-diversity beta-diversity gamma-diversity macarthurs-homogeneity relative-homogeneity gini-index jaccard-similarity richness shannon-entropy sorensen-dice-distance hcdt renyi-index
Language:Jupyter Notebook 0
Ahmed-A-Mohamed / metaGEENOME
metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.
16srrna alpha-diversity beta-diversity metagenomic-analysis metagenomic-pipeline statistical-analysis
Language:R 0
AndrewIOM / local-ecological-footprinting-tool
The Local Ecological Footprinting Tool (LEFT), is a web-based decision support tool which can help businesses minimise the environmental impacts of their activities when they make decisions about how land is used.
beta-diversity ecological-footprint ecology ecosystems
Language:HTML 0
iliapopov17 / Human-Microbiome-Research-Manual
Repository for report for study project «Human Microbiome Research» by Blastim
metagenomic-analysis study-project manual alpha-diversity beta-diversity
Language:HTML 0
JTSALAH / Fish-Diversity-Ecology-Assessment
Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!
alpha-diversity beta-diversity community-ecology ecology gamma-diversity r richness richness-estimation adehabitat
Language:HTML 0