Vallender Lab's repositories
MicrobiomeR
A comprehensive and customizable R package for microbiome analysis.
JournalAnalysis
A repository for exploring journals that we would like to publish under.
vallender-pkgdown-theme
A css theme for Vallender Lab pkgdown documentation.
cookiecutter-snakemake-workflow
A cookiecutter for snakemake workflows.
dnaseq-gatk-variant-calling
A DNA sequencing pipeline based on the GATK best-practices workflow.
fastStructure
A variational framework for inferring population structure from SNP genotype data.
Language:PythonMIT000
MicrobiomeR-JOSS
This repository hosts our JOSS journal article for the MicrobiomeR package.
rnaseq-tuxedo-suite
An RNASeq snakemake workflow using the Tuxedo suite.
semver.org
Semantic Versioning spec and website
vallenderlab.github.io
This is the software website for the Vallender Lab.
vcf_to_dataframe
Get a pandas DataFrame from a possibly gzipped VCF file.
Language:Python000
mu-paper-dataviz
Data visualization for Xiao's mu opiod paper.