alpha-diversity

There are 0 repository under alpha-diversity topic.

vallenderlab / MicrobiomeR
A comprehensive and customizable R package for microbiome analysis.
microbiome microbial-genomics microbiome-analysis phyloseq metacoder r rstats visualization color-palette bioinformatics permanova alpha-diversity beta-diversity pcoa comprehensive metagenomics microbiology
Language:R 18
philippmuench / AIH_metagenome
code to reproduce AIH results
16s metagenomics pcoa abundance cohort alpha-diversity
Language:R 4
Brochado-Kith / microbiome_analysis
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
16s alpha-diversity beta-diversity microbiome microbiome-analysis microbiome-workflow phyloseq rstudio shinny beta diversity metagenomic-pipeline
Language:R 3
iliapopov17 / The-shadow-of-HIV
Repository for course project in Bioinformatics Institute 2023-2024
snakemake alpha-diversity beta-diversity differential-abundance-analysis dna hiv relative-abundances bowtie2 kraken2 maaslin2 samtools iontorrent
Language:Jupyter Notebook 3
Microbiome-Diversity-Inspector / Microbiome-Diversity-Inspector
Microbiome Diversity Inspector - A platform for visual analysis of microbiome data.
microbiome-diversity-inspector microbiome-data alpha-diversity desktop-application standalone analysis web-application entropy file-conversion real-time-processing
Language:JavaScript 2
shivankurkapoor / microbiome-data-analysis
Microbiome Data Analysis
microbiome-analysis data-science beta-diversity alpha-diversity beta-regression
Language:Python 1
abarghi / Diversity_Using_Vegetarian_and_Tidyverse
Alpha, beta and gamma diversities are computed and visualized using formulas and using the R package vegetarian.
vegetarian-r-package tidyverse ecology alpha-diversity beta-diversity gamma-diversity
Language:Jupyter Notebook 0
abarghi / Measuring_Linguistic_Diversity
alpha-diversity beta-diversity gamma-diversity macarthurs-homogeneity relative-homogeneity gini-index jaccard-similarity richness shannon-entropy sorensen-dice-distance hcdt renyi-index
Language:Jupyter Notebook 0
Ahmed-A-Mohamed / metaGEENOME
metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.
16srrna alpha-diversity beta-diversity metagenomic-analysis metagenomic-pipeline statistical-analysis
Language:R 0
iliapopov17 / Human-Microbiome-Research-Manual
Repository for report for study project «Human Microbiome Research» by Blastim
metagenomic-analysis study-project manual alpha-diversity beta-diversity
Language:HTML 0
JTSALAH / Fish-Diversity-Ecology-Assessment
Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!
alpha-diversity beta-diversity community-ecology ecology gamma-diversity r richness richness-estimation adehabitat
Language:HTML 0