maaslin2

There are 0 repository under maaslin2 topic.

• iliapopov17 / The-shadow-of-HIV

  🦠Research project in Bioinformatics Institute 2023-2024

  snakemakealpha-diversitybeta-diversitydifferential-abundance-analysisdnahivrelative-abundancesbowtie2kraken2maaslin2samtoolsiontorrent
  Language:Jupyter Notebook 3

• Zubair2021 / 16S_Microbiome_Analysis

  This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio

  16smicrobiome-analysismicrobiotapipelineqiime2deseq2maaslin2
  Language:Shell 2

• PopovIILab / BatShotMetaFlow

  🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics

  abricatealpha-diversitybeta-diversityblastdifferential-abundance-analysesfastanifastq-fileshumann3kraken2lab-journalmaaslin2microbial-communitiesphylogeneticsprokkaquastrefseqshotgun-metagenomicsspadesvirsorter2
  Language:HTML 0

• qplevier / geneset_visualisation_pipeline

  cytoscapeenrichmentmapgsealimmamaaslin2snakemakewgcna
  Language:Java 0

• oliverdesa / Clustering_Metagenomics

  This directory contains many scripts delving into the downstream analysis of shotgun metagenomic sequencing data from colorectal cancer patient, ICI patients and some IBD patients. This directory is not finished or meant to be copied and used by others. simply to provide examples of code currently being written and worked on.

  bioinformaticsmaaslin2machine-learningmicrobiotapythonrrna-seqshellvisualizationshotgunmetagenomicsequencing
  Language:Jupyter Notebook