vmikk

metagMisc

Miscellaneous functions for metagenomic analysis.

PhyloNext

A pipeline for phylogenetic diversity analysis of GBIF-mediated data

NextITS

A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

BatchBlaster

Nextflow-based BLAST pipeline

dadaist2

🎨 dadaist2 - Highway to R

biodiverse-docker

Docker and Singularity images to run Biodiverse software

symlink2file

Replace symlinked files with their original files

autorestic

Config driven, easy backup cli for restic.

bioconda-recipes

Conda recipes for the bioconda channel.

biodiverse

A tool for the spatial analysis of diversity

community_network_analyzer

Scripts for analazing community data through coocurrence graphs.

distwiz

distwiz - Sparse to full matrix converter

dotfiles

goclust

Clustering tool for sparse matrices produced by USEARCH

GSMc-Fungi.github.io

The Global Soil Mycobiome consortium dataset

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

phylonext-ui

phylonext-ws

phylonext_manual

PhyloNext documentation

PhyloNext_manuscript

Data and scripts accompanying the PhyloNext manuscript

seqhasher

SeqHasher

sh_matching_pub

SHMatcher

Species hypothesis (SH) matching analysis tool

swarm

A robust and fast clustering method for amplicon-based studies

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun metagenomic data

test-datasets

Test data to be used for automated testing with the nf-core pipelines

tools

Python package with helper tools for the nf-core community.

tshbot

Execute shell commands via Telegram

ucs

UC file summarizer

vmikk

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