smlm

There are 0 repository under smlm topic.

• jungmannlab / picasso

  A collection of tools for painting super-resolution images

  microscopysuper-resolutionsmlmdna-paint
  Language:Python 102

• TuragaLab / DECODE

  This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

  smlmmicroscopydeep-learninglocalization-microscopyhigh-densitygpupytorch
  Language:Python 85

• MSiemons / REALM

  Adaptive Optics plugin for MicroManager

  aberration-correctionsmlmlocalization-microscopyguideformable-mirroradaptive-opticsmicroscopy
  Language:Java 11

• bencardoen / smlmvis

  Superresolution visualization of 3D protein localization data from a range of microscopes

  microscopysmlmsuperresolutionvisualization-toolsvtk
  Language:Jupyter Notebook 5

• Haydnspass / decode

  This is the original repo of the DECODE implementation (mirrored by github.com/TuragaLab/DECODE).

  condadeep-learningmlpytorchsmlm
  Language:Python 5

• SRMLabHUST / LuckyProfiler

  An ImageJ plugin that uses the Projected-line FWHM resolution method to determine the image resolution of a final image.

  imagejsmlmfwhmimage-resolution
  Language:Java 5

• DominiqueBourgeois / SMIS

  Single Molecule Imaging Simulator with Advanced Fluorophore Photophysics

  multicolorphotophysicssingle-particle-trackingsmlmfluorophore-photophysics
  Language:MATLAB 4

• hrheydarian / 3D_SMLM_visualization

  smlmvisualizationpoint-clouddensity-visualization
  Language:MATLAB 4
• IJLookUpSTORM

  CURTLab / IJLookUpSTORM

  ImageJ 1.x implementation of a 3D real-time single molecule localization microscopy algorithm based on lookup tables

  smlmmicroscopylookup-tablefitting-algorithm
  Language:C 2

• Jan-NM / LAND

  Localization Analyzer for Nanoscale Distributions (LAND) - 2D and 3D Analysis of SMLM Data

  microscopysmlmlocalization-microscopycluster-analysis
  Language:MATLAB 2

• bencardoen / ERGO.jl

  Object / density detection in astigmatic superresolution dSTORM microscopy

  adaptivedstormgraphjuliamicroscopy-imagesobject-detectionsmlm
  Language:Jupyter Notebook 1

• ezrabru / POLCAM-SR

  Software to process single-molecule and diffraction-limited polarisation camera image data.

  smlmsmlm-datasmolmmicroscopysuper-resolutionlocalization-microscopypolarization-imagingpolarization-camera
  Language:MATLAB 1

• HMels / Channel-Registration-SMLM

  Uses Catmull Rom Splines optimisation to align multiple channels in Single Molecule Localization Microscopy (or Super Resolution Microscopy). Done as part of the Thesis of Mels Habold at the Quantative Nanoscopy group of Delft University of Technology in 2022.

  image-processingimagingoptimisationsmlmsuper-resolution
  Language:Python 1

• MAILFERT-Sebastien / UNLOC

  [ImageJ] Single Molecule Localization Microscopy (SMLM) plugin: UNLOC

  dna-paintfiji-pluginimagejmatlabpalmsmlmsmlm-datastormunloc
  1
• smlmkalman

  andrew-buist / smlmkalman

  An R Package for the functions generate_filaments() and crescent_kf(), for use in SMLM (DNA-PAINT) image segmentation of filamentous structures, such as microtubules.

  dna-paintimage-segmentationkalman-filterkalman-filteringkalman-trackingmicrotubulemicrotubulessmlmsmlm-data
  Language:R 0

• csoeller / PYME-extra

  extensions and plugin additions for python-microscopy (PYME)

  python-microscopypymemicroscopysmlm
  Language:Python 0

• CURTLab / 2CALM

  CALM (2-sample Comparative Analysis of 3D Localisation Microscopy data) is an analysis pipeline, which organizes localisation microscopy data into clusters of different dimensions and calculated the samples’ statistical parameters using various numerical methods.

  analysisclusteringmachine-learningsmlm
  Language:MATLAB 0

• imrahilias / biophysics

  All this is part of my Projektarbeit (student project) @ TU Wien 2021

  super-resolutionfluorescence-microscopy-imaging3d-microscopysmlmsingle-molecule-imagingdual-channel-smlm
  Language:Jupyter Notebook 0

• KierranFalloon / SMLM-Scripts

  Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"

  microscopy-image-analysisphysicssingle-molecule-localizationsmlmimagej-macrolocalizationpython
  Language:Python

• sfu-mial / smlmvis

  Superresolution visualization of 3D protein localization data from a range of microscopes . Mirror of https://github.com/bencardoen/smlmvis

  dstormpoint-cloudpythonsmlmvtk
  Language:Jupyter Notebook