gsneha26

SegAlign

A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043

urWGS

Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5

Darwin-WGA

Co-processor for whole genome alignment

cactus

Official home of genome aligner based upon notion of Cactus graphs

GenomeWorks

SDK for GPU accelerated genome assembly and analysis

Halide-to-Hardware

lastz

Program for aligning DNA sequences, a pairwise aligner.

pepper

P.E.P.P.E.R.: Program for Evaluating Patterns in Pileups of Erroneous Reads

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

spoa

SIMD partial order alignment tool/library

zhang-shasha

Tree edit distance using the Zhang Shasha algorithm