protein-protein-interaction-network

There are 1 repository under protein-protein-interaction-network topic.

• ylaboratory / ETNA

  Embeddings to Network Alignment - align biological networks between two species

  bioinformatics-toolcomputational-biologynetwork-alignmentppi-networksprotein-protein-interaction-network
  Language:Python 9

• mathcom / CPR

  Identification of heterogeneous biomarkers for breast cancer using Clustering and PageRank algorithms (bioinformatics)

  bioinformaticsmachine-learningbreast-cancerprognosisgene-expressionprotein-protein-interaction-networkpagerankk-means-clustering
  Language:Python 7

• ladyson1806 / SerohijosLab-piQTL

  GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]

  bioinformaticsbiological-networksgwasomics-data-integrationpopulation-geneticsprotein-protein-interaction-networkqtl-mappingsystems-biologyyeastgene-interaction-network
  Language:Jupyter Notebook 4

• gitter-lab / pathway-parameter-advising

  Parameter advising for biological pathway creation algorithms

  hyperparameter-tuningprotein-protein-interaction-networkgraphlet
  Language:Python 3
• PPMI_MAGNN

  nmvdlei / PPMI_MAGNN

  Implements the MAGNN algorithm to predict concentration change sign for metabolites using protein-protein-metabolite interaction (PPMI) networks

  heterogeneous-graph-neural-networkprotein-protein-interaction-networkmagnngraph-representation-learningmetabolomicsmulti-label-classification
  Language:Jupyter Notebook 3

• ComputeSuda / SGAD

  Protein Interaction Network Reconstruction with a Structural Gated Attention Deep Model by Incorporating Network Structure Information

  protein-protein-interactionprotein-protein-interaction-network
  Language:Python 2

• Imiloin / CenProteo

  BIO2502 Course Project - Find the essential proteins in an interaction network

  bioinformaticspythonproteinprotein-protein-interaction-network
  Language:Python 2

• marcottelab / super.complex_website_humap

  Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM

  community-detectionprotein-complexesprotein-complex-identificationsupervised-machine-learningprotein-protein-interaction-networkprotein-protein-interactions
  Language:HTML 2

• bshashikadze / maternaldiabetes-offspring-liver-omics-paper

  Reproducibility repo for Shashikadze et al. "Maternal hyperglycemia induces alterations in hepatic amino acid, glucose and lipid metabolism of neonatal offspring: Multi-omics insights from a diabetic pig model".

  diabetesmass-spectrometrymetabolomicsmultiomicsproteomicsstatisticsprotein-protein-interaction-networkclinical-chemistry
  Language:Markdown 1

• chinghao0703 / biocompdesign

  graphical-modelsbelief-propagationpython27signaling-networksprotein-protein-interaction-networkpython
  Language:Python 1
• PPI-hypergraph-geometry

  kevin-murgas / PPI-hypergraph-geometry

  Code for publication: Hypergraph Geometry Reflects Higher-Order Dynamics in Protein Interaction Networks; Kevin A. Murgas, Emil Saucan, Romeil Sandhu; Scientific Reports (2022)

  forman-curvaturehypergraphnetwork-analysiscancerdiscrete-geometryprotein-protein-interaction-networkstem-cell-differentiation
  Language:MATLAB 1

• marcottelab / RL_complex_detection

  Reinforcement learning community detection method using known communities

  community-detectioncommunity-detection-algorithmprotein-complexesprotein-protein-interaction-networkreinforcement-learning
  Language:Python 1

• MendenLab / miRNAInt_Ferroptosis

  Multi-omics differential expression and integration using PPI networks

  differential-expression-analysismultiomicsomics-data-integrationprotein-protein-interaction-network
  Language:R 1

• KorkinLab / alt-in-tool

  altenative-splicingprotein-protein-interaction-network
  Language:Python 0

• MolBIFFM / diana

  data integration and network analysis of post-translational modification based on mass spectrometry data

  post-translational-modificationprotein-protein-interaction-network
  Language:Python 0

• SovanSaha / Assessment-of-GO-based-protein-interaction-affinities-in-the-3-large-scale-human-coronavirus-family

  The work focuses on assessing the host-pathogen 21 protein interaction affinity of the coronavirus family, having 44 different variants. In light of these 22 considerations, a GO-semantic scoring function is provided based on Gene Ontology (GO) graphs 23 for determining the binding affinity of any two proteins at the organism level.

  bioinformaticscovid-19proteinprotein-protein-interaction-network
  0

• marcottelab / RL_humap_prediction

  Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL

  community-detectionprotein-complex-identificationprotein-complexesprotein-protein-interaction-networkprotein-protein-interactionsreinforcement-learning
  Language:HTML