Savandara Besse's repositories
SerohijosLab-piQTL
GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]
gephi-plugins
Switch to the sigmaexporter-plugin branch (https://github.com/oxfordinternetinstitute/gephi-plugins/tree/sigmaexporter-plugin/modules/sigmaExporter) or jsonexporter-plugin branch (https://github.com/oxfordinternetinstitute/gephi-plugins/tree/jsonexporter-plugin/modules/JsonExporter) for the relevant code.
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
igvShiny
an htmlwidget version of igv, for RStudio and Shiny apps
M1_Project_MoveGO
Webtool for the visulization of enriched GO terms for a gene list
NKR_lifespan
GitHub Repository associated to the study of H. glaber and M.musculus shared proteome for understanding their difference in maximum lifespan [ Hussin Lab, Université de Montréal ]
Oskar_Evolution
Leo Blondel, Savandara Besse, Cassandra Extavour (2021)
MatrixEQTL
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
pandas_data_wrangling
A tutorial on how to manipulate data in python using the pandas framework
public_hosting
Repository for data storage
PyWGCNA
PyWGCNA is a Python package designed to do Weighted correlation network analysis (WGCNA)
react-spotify-player
Realtime Spotify Player built with React.
refseq2kraken
Download refseq-genomic data and prepare it for Kraken
safe-data
Contains the sample input and output files for SAFE demos and tutorials
safepy
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)