protein-families

There are 0 repository under protein-families topic.

LKremer / showTree
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
gene-families protein-families ete3 python protein-domains phylogenetic-trees phylogenetics visualization treeview
Language:Python 30
laelbarlow / amoebae
Workflow for identifying and classifying homologous gene/protein sequences
bioinformatics hmmer3 biopython python3 blast genome-annotation similarity-search coulson-plot transcriptome-annotation snakemake-workflow comparative-genomics homology molecular-evolution gene-families protein-families orthology
Language:Python 20
idrblab / PFmulDL
Multi-label protein function annotation
protein protein-families protein-function protein-function-prediction
Language:Python 7
kaledhoshme123 / Using-Deep-Learning-to-Annotate-the-Protein-Universe
Understanding the relationship between amino acid sequence and protein function is a long-standing problem in molecular biology with far-reaching scientific implications.
classification cnn-classification protein protein-families protein-family protein-sequence protein-sequences protein-structure
Language:Jupyter Notebook 1
paulashford / funvar-tracerx
Collated scripts for FunVar-TRACERx gene duplication, diversity and neofun.
cancer-genomics mutation-analysis protein-families funvar
Language:R 1
bio2bel / expasy
A Bio2BEL package for converting ExPASy to BEL
protein-families networks-biology systems-biology biological-expression-language proteins expasy
Language:Python 0
bio2bel / interpro
A Bio2BEL package for converting InterPro to BEL
biological-expression-language systems-biology networks-biology protein-families proteins protein-domains interpro
Language:Python 0
bio2bel / famplex
Convert FamPlex to BEL
biological-expression-language protein-families protein-complexes terminology ontology
Language:Python
bio2bel / pfam
A Bio2BEL package for PFAM (https://pfam.xfam.org/)
biological-expression-language protein-families terminology pfam
Language:Python