ete3

There are 0 repository under ete3 topic.

• LKremer / CAFE_fig

  A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

  cafegene-familiesevolutionmolecular-evolutionete3phylogenetic-trees
  Language:Python 63

• LKremer / showTree

  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

  gene-familiesprotein-familiesete3pythonprotein-domainsphylogenetic-treesphylogeneticsvisualizationtreeview
  Language:Python 32

• Grelot / global_fish_genetic_diversity

  Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020

  rjulia-languagepython3geneticsecologymapstatistical-analysisalign-sequencesshapefilebiodiversityete3ncbi-taxonomyspatial-analysisbold-databasedata-sciencedata-curationdata-analysis
  Language:R 9

• linzhi2013 / taxonomy_ranks

  To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)

  taxonomyranksncbiete3
  Language:Python 9

• fenryka / org-chart

  Organization Chart generator using Python and ETE

  ete3org-chartpythonpython3
  Language:Python 1

• wijerasa / ete-build

  Phylogenetic tree construction using ETE toolkit

  pythonete3
  1

• BHNtools / dockerEte

  Docker images for ETE3.

  dockerete3phylogeny
  Language:HTML 0

• danschnurp / kiv-fjp

  A compiler for the "Not so Swift" programming language that translates source code into PL/0 instructions, featuring variables, functions, loops, conditionals, arrays, and lambda expressions. Built in Python using PLY for lexical/syntactic analysis and ETE3 for syntax tree generation.

  plyswiftete3pl0pl0-compiler
  Language:Python 0

• laelbarlow / sort_seqs_by_clade

  Script for sorting FASTA sequences by clade in a given tree topology.

  ete3biopython-libraryphylogenetic-tree
  Language:Python 0

• MuthusaravananS / phylogeny-tree-with-MSA-and-Domain

  The script will generate and display the phylogeny tree, with MSA and domain distribution labels assigned to the tree leaves.

  ete3msapfamphylogenyprotein-sequencespython
  Language:Python

• ResearchIT / ete3

  Singularity Recipe for ete3

  ete3singularity
  Language:Roff

• SANBI-SA-archive / tree2neo

  Tree2neo is a command line tool to import Newick tree (nhx) files to neo4j database

  neo4jpythonpy2neoete3combattbbioinformaticsfasta
  Language:Python