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Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020
To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)
semestral work at University of West Bohemia, Faculty of Applied Sciences, Department of Computer Science and Engineering
Script for sorting FASTA sequences by clade in a given tree topology.
The script will generate and display the phylogeny tree, with MSA and domain distribution labels assigned to the tree leaves.
Tree2neo is a command line tool to import Newick tree (nhx) files to neo4j database