LKremer

ggpointdensity

:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

CAFE_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

showTree

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

MSA_trimmer

Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

scbs

Python package with CLI for downstream analysis of single cell methylation data.

TEcov

A pipeline to to determine the repeat content of genes and their neighboring regions.

AAV-screening

Code used in the screening for efficient AAV serotypes

CatanDice

Kivy smartphone app to simulate less erratic dice rolls for the Settlers of Catan card game.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

biopython.github.io

Source of biopython.org website, migrated from MediaWiki

CatanDice2

catan dice 2

Data

Data shared by Martin-Villalba-lab at DKFZ, Heidelberg, Germany

dmrseq

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

EDSB_Vorlesung

epipolymorphism

A command-line tool to estimate epigenetic polymorphism from bisulfite-converted sequencing reads

epiScanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

gallery

Gallery of ggplot2 extensions

Genomic-comparisons-in-Blattodea

Genome analysis scripts

hydeout

A refreshed version of Hyde for Jekyll 3.x

InsulinReceptorEvo

"Reconstructed Evolution of Insulin Receptors in Insects Reveals Duplications in Early Insects and Cockroaches" - supplementary data and figures

LKremer

plate_scATAC-seq

A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method

proDD

Differential Detection for Label-free (LFQ) Mass Spec Data

RaspberryPiAlarmClock

A basic radio alarm clock tool that first plays a web radio and then a buzzer. Alarm times are retrieved from Google Calendar.

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scanpy_usage

Scanpy use cases.

tecan

Read Absorbance Files of the Tecan Plate Reader Infinite 200

ursgal

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis